Protein Info for Psyr_2342 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: CBS:Transporter-associated region:Integral membrane protein TerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 522 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 47 to 69 (23 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 122 to 147 (26 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 184 to 202 (19 residues), see Phobius details amino acids 213 to 231 (19 residues), see Phobius details PF03741: TerC" amino acids 14 to 203 (190 residues), 150.9 bits, see alignment E=5e-48 PF00571: CBS" amino acids 304 to 362 (59 residues), 19.2 bits, see alignment 1.9e-07 amino acids 371 to 423 (53 residues), 35 bits, see alignment 2.2e-12 PF03471: CorC_HlyC" amino acids 440 to 515 (76 residues), 58.9 bits, see alignment E=6.1e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2342)

Predicted SEED Role

"Membrane protein, TerC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZTZ0 at UniProt or InterPro

Protein Sequence (522 amino acids)

>Psyr_2342 CBS:Transporter-associated region:Integral membrane protein TerC (Pseudomonas syringae pv. syringae B728a ΔmexB)
MEWIADPTAWLGLLTLIVLELVLGIDNLVFIAILADKLPPEQRDKARVIGLSLALIMRLG
LLASISWMVTLTEPLFEVFGKTFSGRDLIMLFGGVFLLFKATMELHERLEGHVAQRAGNA
GYALFWPIVAQIVVLDAVFSLDAVITAVGMVEHLSVMMIAVIFSIGLMMIASKPLTKFVN
SRPTVIMLCLGFLMMIGFSLTAEGLGFHIPKGYLYAAIGFSILIEVFNQIARKRSKKSAH
GHLPRRERAAHAVMRLLGGRKLESGDVDEEITDMLDGESSEPVFDRRERVMISGVLQLAE
RPIRTVMTPRAEVDCIDLNDSAEKIRLKLMHSSYSRLPLIGERGIDEPLGFVHKKELFKE
LLSGNEPDLKLMSRKAINLLESFTILNALEQMRKESTHIAFVVNEFGDFIGVLSMTDILE
SIAGQLPDASEVEGPDIVEQGEDFVVSGALNLSLIRERTGFQAKATEDYQTLAGLVMSLL
DRLPSTGDSLSWQGWNLHVVGVEERRVTRVLLQKQPEMGSGK