Protein Info for Psyr_2305 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Natural resistance-associated macrophage protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 31 to 49 (19 residues), see Phobius details amino acids 64 to 85 (22 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 140 to 161 (22 residues), see Phobius details amino acids 172 to 195 (24 residues), see Phobius details amino acids 215 to 233 (19 residues), see Phobius details amino acids 262 to 283 (22 residues), see Phobius details amino acids 303 to 321 (19 residues), see Phobius details amino acids 352 to 370 (19 residues), see Phobius details amino acids 376 to 397 (22 residues), see Phobius details amino acids 418 to 438 (21 residues), see Phobius details TIGR01197: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family" amino acids 32 to 406 (375 residues), 364.5 bits, see alignment E=4e-113 PF01566: Nramp" amino acids 54 to 413 (360 residues), 452.3 bits, see alignment E=6e-140

Best Hits

Swiss-Prot: 85% identical to MNTH1_PSEAE: Divalent metal cation transporter MntH 1 (mntH1) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K03322, manganese transport protein (inferred from 100% identity to psb:Psyr_2305)

Predicted SEED Role

"Manganese transport protein MntH" in subsystem Transport of Manganese

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZU24 at UniProt or InterPro

Protein Sequence (439 amino acids)

>Psyr_2305 Natural resistance-associated macrophage protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MTYKLPTTATAPFCPSATTDSVAIPPNASLLRKMTLFVGPGLLVSIGYMDPGNWATAIEA
GSRFGYSLLFVVVLASLSGMVLQNLCSRLGIATGRDLAQLSAARYSRKVAKGQWLLAELS
IIATDLAEVLGAALAFHLLLGVSITTGVALTAFDTLIVLALQGANFRRLEAIVLGLIATI
ASCFAVELFLIKPFWPDVVAGLKPSWDVLSSQEPLYIAIGILGATVMPHNLYLHSSVVQT
RVNGSDQASKASAIRYARLDTIGSLSLALLINAAILILAAAAFHKTGHTEVVEIQDAYHL
LDPLVGGAIASVLFGIALLAAGQSSTFTGTIAGQVVLEGFLQAKIPCWQRRLITRALALI
PALIGVIWLGDSSVGQMLVLSQVVLSLQLPFALWPLIRFTSDPQLMGPFVNSRLVKTAAW
GLFGLISAANLTLLWFWIS