Protein Info for Psyr_2181 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 28 to 50 (23 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 86 to 109 (24 residues), see Phobius details amino acids 120 to 142 (23 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 195 to 218 (24 residues), see Phobius details amino acids 225 to 244 (20 residues), see Phobius details amino acids 260 to 291 (32 residues), see Phobius details amino acids 297 to 316 (20 residues), see Phobius details amino acids 325 to 343 (19 residues), see Phobius details amino acids 346 to 366 (21 residues), see Phobius details PF07690: MFS_1" amino acids 3 to 295 (293 residues), 61.2 bits, see alignment E=4.4e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2181)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZUE8 at UniProt or InterPro

Protein Sequence (369 amino acids)

>Psyr_2181 Major facilitator superfamily (Pseudomonas syringae pv. syringae B728a ΔmexB)
MLQVLVWGGSFFLMAVMADSIMKETGWASQWVYGALSLSILVSAMLAPLTSRLIAQYGGR
PILASSGLGVAIGLFLMASSTSLPMFFLSWAVIGVGMALGLYEALFAALGSLYGERAGSA
ITGITLVSGFATTLSWPAVALVIEHVGWRTTCVAYGVLLVIVVAPLYLWVLARGTGPLIK
SQVAGGESFSIDRRIYLLLTLIFALGAVIMTAMSVQLISLLQGQGYSLAAAVGLSALLGP
SQVGSRVLQVFSRTRHPIWTTLISVIFVAIGLLIVTIAPAMTALGLVIYGAGNGLRAIVR
GLLPLALMSPTHYVLLMGRMARPSLIGQALTPLAGGYLLQAWGAGGVLAGLSVLAVLNVL
LVLLLIRLV