Protein Info for Psyr_2044 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: YD repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1578 PF05593: RHS_repeat" amino acids 1238 to 1271 (34 residues), 22.7 bits, see alignment (E = 5.5e-09) TIGR03696: RHS repeat-associated core domain" amino acids 1336 to 1415 (80 residues), 73.6 bits, see alignment 1.5e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2044)

Predicted SEED Role

"YD repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZUT5 at UniProt or InterPro

Protein Sequence (1578 amino acids)

>Psyr_2044 YD repeat protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MTASTSVHSNAFNFLSYVQSGVDPRTGQYTVAITLPDVKTNGLRGPGMPLALNYNPLNRQ
DSGFGLGWNLQLSQYDPGNQIVSLSSGETFKVDGTSDDQMLMSEKKIDSFHLYKEDETHF
RVMHKSGLVELLELRGSGANRVALPVRVFAPEGHSVTLDYASFGGYQMLSEVTDDSGQLL
LGISREDTAVTLRMTTGEGPDATFKMVLGGSDHRVNRIELPTDNAASWRFVYSLIREHLC
MTSVETPVGGREEIFYTDGGHQFPARAARPPLPRVTRHRTTPGLGQAQMDVFYSYQDSAG
RERNFLGAGLDIAWEDNGLDNLYRYLGAELYEYSSTETLRVQVAGKPDAERSIERTFNQF
HLLTRETTRKNLTVMQVDTRYYIVPGQPFFTQPAYCQLPKEVQTTWRLSSDGSVPRSEMV
SSTYDKHGNLLTQTQANGMVEVSEWYPAAGEDGCPPDPEGFVRWMKSSKIIPAASDYGNA
PVLITRYRYTALPAVDGGQLQQWLAPQSETLLMQAPEDEYEQRLTTYEYFDEPNNALLHG
RLKLQRVIMGENATSTEYAYSTPDSEIYGKTVLQTVQTVTGFDGAKKVTTLEDSLLNGEP
LLNRDDNNVEIRYVYDSLRRVLSETVAPNDDIYQATRSYEYQLCAKATDQATQTLIDVKG
VKTCSHFDGLNRVIHEERDDADKPARVDKPRQTYAAVYDAWGLMVNETEFDWLGQQDLAL
KSVYEYDDWGEQRCVTGADNIKTFEETDPIGTAQSQGPVQRSWIEGTDGKGKSEFTETWM
NLFEQPTRSERQDKAGTSVSLSQYHYDGLGRRVEEIVGVVNGGRRTTYVYDVFDRVIEST
LPSEAIVRRSYASHSSEDLPISIGIEHNGKSIVLGEQSFDGLDRLVSSVTGGRKRTLVYD
VGLLQPRTVTLPSKRKIDYEYKPQVGDEPWRRVQSEAEPEPDTTREVDPLKQSGPGAAPA
RTAEPGVAADYTYDKQNARLIHSEEQGEILDREYYSTGSLKSEKRTSAGKTYDMFYSYSR
QGLLLSYTDVLGQEQVNRYDTCGRLEETRLGEVYSTFAYDVVFGRLAKITTTDQTDSSRE
RTVAISLEYDDLGREVKRTFDLDGVEQQMVQVYDDVDDMVQRTLSEGTEILRDEHYNYDT
SGRLTQYQCTGTQRPVDPYGRTLLGQNFIFDGANNLTFVTTRFDGGSNNARYFYEGDDPV
QLSRVTNTNHAYYPPEINLRYDPDGNLDIDEAGRTLKYDPLGRLIEVGTLSAGIHYQYDP
QDQLTGETRGGDRDLRFYRDGELANQLGSQGQSTFMRGDDYLLAEQQGDRTLLLATSASD
SVLGEVAADGVNRRWYTAYGHASGEDPPHGRLGFNGELSEADTGWQMLGNGYRAYSPVLM
RFNSPDSWSPFGEGGMNAYAYVEGDPVNMRDPTGHFGLFTPFKLLYRALKTTPTLTTKSP
GVEKIPGLLTSRGRKEVTKLSKITMDDWDDLTDVAESYPARIRSAKIDNKPGLAATLTTK
QTEAKDALNYLSAHVNQPGITAHARRAIKKDLSFAKKELKKIPTPEKIRNSSRTPARSKP
YWINRRQKKDRFGFNPDN