Protein Info for Psyr_2029 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Protein of unknown function UPF0118

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 transmembrane" amino acids 7 to 25 (19 residues), see Phobius details amino acids 31 to 48 (18 residues), see Phobius details amino acids 58 to 80 (23 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 220 to 249 (30 residues), see Phobius details amino acids 269 to 290 (22 residues), see Phobius details amino acids 302 to 331 (30 residues), see Phobius details PF01594: AI-2E_transport" amino acids 11 to 339 (329 residues), 157.7 bits, see alignment E=2.1e-50

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2029)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZUV0 at UniProt or InterPro

Protein Sequence (348 amino acids)

>Psyr_2029 Protein of unknown function UPF0118 (Pseudomonas syringae pv. syringae B728a ΔmexB)
MFNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAA
LVMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVA
LWTTIDQQGAAFMATLKPHLGQVGNWILARSAQIGSGILELTLSIVFAFFFYRDGPRLAA
FVLSLLERLIGERAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGI
LTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRGGN
LPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARSR