Protein Info for Psyr_1992 in Pseudomonas syringae pv. syringae B728a ΔmexB
Annotation: Zinc-containing alcohol dehydrogenase superfamily
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 53% identical to ADHC1_MYCS2: NADP-dependent alcohol dehydrogenase C 1 (adhc1) from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
KEGG orthology group: K00002, alcohol dehydrogenase (NADP+) [EC: 1.1.1.2] (inferred from 100% identity to psb:Psyr_1992)MetaCyc: 51% identical to 8-hydroxygeraniol dehydrogenase (Catharanthus roseus)
RXN-12961 [EC: 1.1.1.324]
Predicted SEED Role
"Alcohol dehydrogenase (EC 1.1.1.1)" in subsystem Fermentations: Mixed acid or Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 1.1.1.1)
MetaCyc Pathways
- 3-methylbutanol biosynthesis (engineered) (6/7 steps found)
- ethanol degradation II (3/3 steps found)
- ethanolamine utilization (4/5 steps found)
- pyruvate fermentation to isobutanol (engineered) (4/5 steps found)
- superpathway of anaerobic sucrose degradation (14/19 steps found)
- acetaldehyde biosynthesis I (1/1 steps found)
- L-tryptophan degradation X (mammalian, via tryptamine) (3/4 steps found)
- phytol degradation (3/4 steps found)
- L-isoleucine degradation II (2/3 steps found)
- L-leucine degradation III (2/3 steps found)
- L-valine degradation II (2/3 steps found)
- erythritol biosynthesis I (1/2 steps found)
- erythritol biosynthesis II (1/2 steps found)
- ethanol degradation I (1/2 steps found)
- pyruvate fermentation to ethanol II (1/2 steps found)
- glycerol degradation to butanol (11/16 steps found)
- mixed acid fermentation (11/16 steps found)
- acetylene degradation (anaerobic) (3/5 steps found)
- hexitol fermentation to lactate, formate, ethanol and acetate (13/19 steps found)
- L-phenylalanine degradation III (2/4 steps found)
- L-tyrosine degradation III (2/4 steps found)
- salidroside biosynthesis (2/4 steps found)
- heterolactic fermentation (12/18 steps found)
- serotonin degradation (4/7 steps found)
- L-methionine degradation III (1/3 steps found)
- pyruvate fermentation to ethanol I (1/3 steps found)
- pyruvate fermentation to ethanol III (1/3 steps found)
- noradrenaline and adrenaline degradation (8/13 steps found)
- (S)-propane-1,2-diol degradation (2/5 steps found)
- phenylethanol biosynthesis (2/5 steps found)
- pyruvate fermentation to butanol I (4/8 steps found)
- D-xylose degradation to ethylene glycol (engineered) (1/4 steps found)
- cytidine-5'-diphosphate-glycerol biosynthesis (1/4 steps found)
- butanol and isobutanol biosynthesis (engineered) (3/8 steps found)
- superpathway of fermentation (Chlamydomonas reinhardtii) (3/9 steps found)
- superpathway of N-acetylneuraminate degradation (12/22 steps found)
- superpathway of Clostridium acetobutylicum solventogenic fermentation (5/13 steps found)
- detoxification of reactive carbonyls in chloroplasts (2/10 steps found)
- superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation (7/17 steps found)
- traumatin and (Z)-3-hexen-1-yl acetate biosynthesis (3/12 steps found)
- L-tryptophan degradation V (side chain pathway) (1/13 steps found)
- superpathway of lipoxygenase (4/22 steps found)
KEGG Metabolic Maps
- 1- and 2-Methylnaphthalene degradation
- 3-Chloroacrylic acid degradation
- Caprolactam degradation
- Drug metabolism - cytochrome P450
- Fatty acid metabolism
- Glycerolipid metabolism
- Glycine, serine and threonine metabolism
- Glycolysis / Gluconeogenesis
- Metabolism of xenobiotics by cytochrome P450
- Retinol metabolism
- Tyrosine metabolism
Isozymes
Compare fitness of predicted isozymes for: 1.1.1.1
Use Curated BLAST to search for 1.1.1.1 or 1.1.1.2 or 1.1.1.324
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q4ZUY7 at UniProt or InterPro
Protein Sequence (350 amino acids)
>Psyr_1992 Zinc-containing alcohol dehydrogenase superfamily (Pseudomonas syringae pv. syringae B728a ΔmexB) MYTAIGYAAQSANAPLAPMTFERRALRADDVAIEILYCGVCHSDIHQARNEWGIAVYPLM PGHEIVGRVTATGSSATQYQVGDMVGVGCMVDSCRECSACKSDLEQYCLEGPTMTYATPD RVDGSNTMGGYSNSIVVAEHFVVRVPEKLDPAAAAPILCAGITTYSPLKHYGVKAGDKVG ILGMGGLGHMGIKFAKAMGAEVTLFTRSAAKAQEAHRQGADHVIVSTDAEQMKAAAGHFD FLLDTIPVQHDLNPYLETLRFDGAHILVGLIEPIEPPVHAANLVMSRRVLAGSLIGGIAE TQEVLDFCAENDITCDIEMLDIRNINEAYERMLAGDVKYRFVIDMATLKA