Protein Info for Psyr_1960 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Non-ribosomal peptide synthase:Amino acid adenylation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2883 transmembrane" amino acids 295 to 312 (18 residues), see Phobius details PF00668: Condensation" amino acids 57 to 483 (427 residues), 351.8 bits, see alignment E=1.4e-108 amino acids 1093 to 1523 (431 residues), 252.9 bits, see alignment E=1.4e-78 amino acids 1555 to 1986 (432 residues), 306.4 bits, see alignment E=8.4e-95 PF00501: AMP-binding" amino acids 515 to 856 (342 residues), 256.3 bits, see alignment E=1.1e-79 amino acids 2007 to 2355 (349 residues), 300.2 bits, see alignment E=5.1e-93 TIGR01733: amino acid adenylation domain" amino acids 529 to 928 (400 residues), 376 bits, see alignment E=2.1e-116 amino acids 2027 to 2430 (404 residues), 452.3 bits, see alignment E=1.5e-139 PF13193: AMP-binding_C" amino acids 913 to 989 (77 residues), 28.1 bits, see alignment (E = 7.8e-10) amino acids 2414 to 2491 (78 residues), 50.4 bits, see alignment (E = 9e-17) PF00550: PP-binding" amino acids 1014 to 1074 (61 residues), 52.4 bits, see alignment (E = 1.3e-17) amino acids 2518 to 2581 (64 residues), 52.8 bits, see alignment (E = 9.7e-18) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 1392 to 1546 (155 residues), 150.3 bits, see alignment 4e-48 PF00975: Thioesterase" amino acids 2605 to 2721 (117 residues), 92.7 bits, see alignment (E = 1e-29)

Best Hits

Predicted SEED Role

"Pyoverdine sidechain non-ribosomal peptide synthetase PvdD @ Siderophore biosynthesis non-ribosomal peptide synthetase modules"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZV19 at UniProt or InterPro

Protein Sequence (2883 amino acids)

>Psyr_1960 Non-ribosomal peptide synthase:Amino acid adenylation (Pseudomonas syringae pv. syringae B728a ΔmexB)
MKWRVSDMDKSAAERIAQRFVGLPVEQRRQILAKMHETGQSFKLLPIAVTRHAAALIPLS
YAQQRMLFLWQMEPGNAAYNVPMAVRLNGALDRQALSAALDRLVQRHETLRTRFVSEDGV
FYQEILEQAKVALEFASAAPAEIEQQVRAELQQPFDLLSGTLLRVKLFQLSESEHVLTVC
MHHVVSDGWSGEVLIREFVQLYQAQVSGQPAPLPELAVQYADYAIWQRAWLEAGEGERQL
DYWKQQLGSEHPLLSLPLDHPRPLQPSHRGAMVRVDLPQQLSVQLKSLARNNGQTLFMVT
LAALSVVLSRFSGQSDIRIGAPNAGRTRSELEGLIGFFINTQVLRVQVDERQSFAELLDQ
VKQVVTGAQSHQELPFEHLVDALAPERNPGHNPLFQFKINQHVLAADGRGQRVSGLTVDE
FPMDSSDARFDLAFDFTDTPDGIRGYFTYATDLFEAQTVERIADALRSVLQALVSDTDRR
LADHPHAISLPVAEQSQDFACPDFLSLWQQGLRAGRGKTALRVGQQVLSFDELETRSNRF
ARYLHAQDIKPGMTVALCLDRSVEWVVSLLAVLKLGAVYLPLDSAQPAERLQQLARDSGA
VLLVYARDDDKAARLGVCPVLAFDAALWAAVDSQALDVRVLPGQAAYIIYTSGSTGQPKG
VVISHGALANYVQGVLERLALSDGASMAMVSTVAADLGHTLLFGALASGRALHLLSHEQA
FDPDGFARYMAEHQVDVLKIVPSHLQGLLQAANPADVLPGQVLILGGEASAWALVEQVRA
LKPGCRVINHYGPTETTVGILTHEVAGPLSACRSVPVGQPLANGKARVLDAYLNPVAERV
AGELYLGGRGLAQGYLGRAAMTAERFVPDPDANGQRLYRAGDRARWVDGVLEYLGRADDQ
VKIRGYRVEPGEVGQLLQTLENVADAVVLAQPLESDETRLQLVAYCVAAAGASLNVESLR
GQLAARLPEYLVPAQIMLLERLPVTANGKLDKRALPMPGVVKQRYTAPVGEIEEKLAAVW
ADVLKLEQVGSTDNFFELGGDSILSLQIIARAKRQGIKLSPKQLFEKQTIGQLASVAKLI
QKKPAAVAEQISGSLPLLPIQARFFELDIPERQHWNQALMLKPLQTLEAAHLQSALTALV
EQHDALRLGFTRQSGQWQATFGAPNTRELLWAHELDSIERLPELAAEAQRSLDLKNGPLL
RAVLINLPQGEQRLLLVIHHLVVDGVSWRVLLEDLQQAYIALAAGQPALLPAKTSSLQAW
AEHLQAYAHSPALEQELGYWQTQLQDVSDALPCDHPHGGQQQQHALSVVTQLNSELTRQL
LQDAPAAYRTQINDLLLTALSRVVSRWTARPHALIRLEGHGREDLFDALDLSRTVGWFSN
VYPVRLTPQASLADSIMTIKEQLRAVPDKGVGYGALRYLGRESARQTLQALPLGSIVFNY
LGQFDGSFDAPEALFTPSADSSGASQSADAPLAAPISINGQVYAGELRLSWTFSGAVFER
ETVHRLADEYAAELQQLIAHCTNEGVAGATPSDFPLARLSQSQLSRLPIAAGQIEDLYPL
APMQQGMLFHTLFEQESGNYINQMRIEVSGLDVPRFRAAWQATLDAHEVLRSAFISHLQP
ALQVVLRDVRMPFVELDARGQSSDWIDQWADADRQQGFDLAQGPLLRLAVVRTGEQSHQL
IYTSHHILMDGWSSSRLLGEVLQRYSGQTLPRQVSRYRDYIEWLQRQDAGLSERFWTGQL
ARLDEPTRLVQAFKAPDSGQGHGDYLHLIDAENTRQLSEFAREQRVTLNTLVQSAWLLVL
QRYTGQSSVTFGATVAGRPADLPGVEEQLGLFINTLPVIASPRAEQRVAEWVQQVQAQNI
ALREHEHTPLYEIQRWARSAGEALFDTILVFENYPVSEALQQAAPPGLVFGGLHTQEQTH
YPLTLVVNLGETLSLRFSYAREAFSEQHMAQLSAHFQQVLQALTHDAQAALGELALLNDN
EQQQILHDWNATAADFPSEDCLHSLIEAQVRATPDASALIFAAEQLSYAQLNARANQLAH
RLRESGVGPDVLVGICVERSLELVIGLLAIIKAGGAYVPLDPDYPEDRLAYMMQDSGIGL
LLTQTALLERLPVPPQLQSLCLDQHGDWLEGYSTANPVNLSHPLNLAYVIYTSGSTGKPK
GAGNSHRALVNRLHWMQKAYALDGSDTVLQKTPFSFDVSVWEFFWPLMTGARLAVALPGD
HRDPERLVQTIREHQVTTLHFVPSMLQAFMTHPQVESCNTLRRVVCSGEALPAELAAQVL
KRLPLAGLYNLYGPTEAAIDVTHWTCSTDDILSVPIGRPIDNLKTHILDDGLLPAAQGVA
AELYLGGVGLARGYHNRAALTAERFVPDPFDEQGGGRLYRTGDLARYRDAGVIDYAGRID
HQVKIRGLRIELGEIEARLHEHAAVREATVIDIDGPSGKQLAAYLVPTDATEAPDVLRER
LQAHLKAHVPDYMVPGYFVFIDSMPLTANGKLDRRALPKPDVARSQQGYVAPRSAFEQRL
AVLWEQVLHVERVGLNDNFFALGGHSLLAVSLAGRIRETFDISIKLHDLLLLQTLGELAD
FMRADEARVKSAVIAMNANSSTHAPLFCLPPGGGGTYSYYPLAGRLSDSRRVYGLVNKAY
VVPGWFDTSWQDMVDYYVEQIRMTQPHGPYNLLGWSMGGALAVEVAHVLERAGEVVSFLG
LVDTQLPASVGMQWVEEDPQVTTQQQGENYYRSLIKSLQAFVPGLQEQTIVDLIEKARQS
VSGESEVIDQVIEQIALQHAMNVDSLRSMFQDIAVQDEIETGYKLLEANAKLSQAFTLKT
LNVQVDCWWAGQSRKPGQIAKAEAVLLEQCSVNGLRSSTTIDQRHDNLVIAEAFLQGLAE
RLV