Protein Info for Psyr_1959 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Amino acid adenylation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2154 transmembrane" amino acids 283 to 297 (15 residues), see Phobius details PF00668: Condensation" amino acids 46 to 482 (437 residues), 393.6 bits, see alignment E=2.3e-121 amino acids 1099 to 1536 (438 residues), 381.1 bits, see alignment E=1.4e-117 PF00501: AMP-binding" amino acids 505 to 855 (351 residues), 301.1 bits, see alignment E=2.1e-93 amino acids 1557 to 1905 (349 residues), 293.9 bits, see alignment E=3.3e-91 TIGR01733: amino acid adenylation domain" amino acids 525 to 929 (405 residues), 453 bits, see alignment E=9.1e-140 amino acids 1577 to 1980 (404 residues), 450.8 bits, see alignment E=4.2e-139 PF13193: AMP-binding_C" amino acids 913 to 986 (74 residues), 46.1 bits, see alignment (E = 1.6e-15) amino acids 1964 to 2038 (75 residues), 48.1 bits, see alignment (E = 3.8e-16) PF00550: PP-binding" amino acids 1013 to 1074 (62 residues), 55.9 bits, see alignment (E = 8.4e-19) amino acids 2066 to 2128 (63 residues), 55.8 bits, see alignment (E = 8.9e-19)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZV20 at UniProt or InterPro

Protein Sequence (2154 amino acids)

>Psyr_1959 Amino acid adenylation (Pseudomonas syringae pv. syringae B728a ΔmexB)
MQQLLDSVKSLSARERKALAVLLKRQGVNLYGVTPIAVRETQAPSALSYAQQRQWIIWQL
EPHSAAYNIPLALRLHGALNVEALRRSVEQLIERHETLRTTFEQQGDEAQQVVHPASPFA
LGAEQLAAGETVERYVDQEVQRPFDLQHGPLLRVRLLRLSAQEHVLVLTQHHIVSDGWSM
PIMVDELMQCYQAATLGREIKLAPLPIQYADYALWQRNWLEMGEQERQLAYWKQQLGEQQ
PILELPTDRPRPALRNYEGARLNVKLDVALLNNLKTLARQQGITLFMLLLASFQTLLHRY
SGQADIRVGVPVANRTRSETQGLIGFFVNTQVLKAEFTTQTTVAGLLQQVRHTAVQAQAH
QDLPFEQLVEALQPQRDLSRSPLFQVACNHQSEGHNQSRELAGLRLEYQVSDKHTAQFDL
TLDTCERPDGLTAALTYATDLFDASTIERMASHWRNLLNGMCHDVNQRIADLPLLSAEER
QNTLRDWNRDLAVYPSEHCAHQRIEAQAERNPQAIALSFGDEQLSYRQLNQRANQLAHKL
REQGVGPDVRVGLAAERGLEMIVGLLAILKAGGAYVPLDPDYPQDRLSFLMHDSGIELLL
TQAHLLERLPIPAQVKSHDLADALDGYSTENPLDKTAPDNLAYVIYTSGSTGKPKGTLLA
HHNLMRLFAATDEWFEFSEKDVWTLFHSFAFDFSVWEIFGALLHGGRLVIVPREVTRSPE
DFHALLVEQQVTVLNQTPSAFKQLMHVACDSSLPMSLQTVIFGGEALDVASLKPWFARFG
DQSPQLINMYGITETTVHVSYRPITLADTQNPASPIGEAIPDLSWYVLDADFNPVAQGCS
GELHIGHAGLARGYHNRAALTAERFVPDPFSSEGGRLYRTGDLARYRATGVIDYVGRIDH
QVKIRGFRIELGEIEARLQAHPAVREVSVLALDGQLAAYLVPTEPDQDQTTLREALKSQL
RARLPDYMVPTHFIVLDSMPLTANGKLDRKALPAPDASQLQATYSAPQGELEQQLAAIWA
DLLKLERVGRSDNFFELGGHSLLATQVISRIRQQLDVELSLRDLFEARDLAAFALAAGAG
QGNGAPRFIKADRKQPLGLSYAQQRQWFLWQLDPENTAYIIPAALRLRGSLDIAALEHSF
SALIARHETLRTTFRQQGEHAVQVIHAPRALTLSVESVPSGQTLEACVQQEMHRPFDLEQ
GPLLRVRLLNLNTDEHVLILTQHHIVSDGWSMPIMVDELVRLYEGYSQGRAVSLTALDLQ
YADYALWQRTWMEAGEQARQLDYWKQQLGDQQPILELPADYPRPVVQSHAGARLAVELEP
ALIDGLKQVARQQGVTLFMLLLASFQSLLHRHSGQSDIRVGVPIANRNRAETEGLIGFFV
NTQVLRAEFDVHTTFNELLQQVKHTALQAQAHQELPFEQLVEALQPQRSLSHSPLFQVMF
NHQSQASADVRALPGLQVEALLPDSYPAQFDLTLNTAEHDGGLSAGLTYATALFDPRTIE
RMAGHWLALLQAICANAAQRIAEVPMLDRAERQQILHDWNATAADFPCEDCLHSLIEAQV
RATPHAPALIFAAEQLSYAQLNARANQLAHRLRESGVGPDVLVGICVERSLELVIGLLAI
IKAGGAYVPLDPDYPEDRLVYMMQDSGIGLLLTQTALLERLPIPPQVQSLCLDPHGDWLE
GYSTANPVNLSHPLNLAYVIYTSGSTGKPKGAGNSHRALVNRLHWMQKAYGLNESDTVLQ
KTPFSFDVSVWEFFWPLMTGARLAVALPGDHRDPERLVQTIREHQVTTLHFVPSMLQAFM
THPQVESCNTLRRVVCSGEALPAELAAQVLKRLPLAGLYNLYGPTEAAIDVTHWTCSTDD
ILSVPIGRPIDNLKTHILDDGLLPAAQGVAAELYLGGVGLARGYHNRAALTAERFVPDPF
GEQGGGRLYRTGDLARYRDAGVIDYAGRIDHQVKIRGLRIELGEIEASLLEHDSVHEAVV
IDVDGPSGKQLAAYLVVEHHDDQLRDALKAFLKESLPDYMVPTHFIVLDRMPLSANGKLD
RKALPKPDASQLQRQYVAPSTEQEQQMAAIWAEVLKVERVGLSDDFFELGGHSLLATQLI
SRIHSGLGIDIPLRLIFEKPQLNEFIQAFADSGLSLTEDGLSDIEKMMNEMAGI