Protein Info for Psyr_1945 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Non-ribosomal peptide synthase:Amino acid adenylation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4336 transmembrane" amino acids 76 to 94 (19 residues), see Phobius details amino acids 223 to 246 (24 residues), see Phobius details amino acids 1975 to 1993 (19 residues), see Phobius details amino acids 2252 to 2268 (17 residues), see Phobius details PF00501: AMP-binding" amino acids 14 to 411 (398 residues), 227.9 bits, see alignment E=3.7e-71 amino acids 1141 to 1487 (347 residues), 298.6 bits, see alignment E=1.3e-92 amino acids 2197 to 2550 (354 residues), 266.5 bits, see alignment E=7.2e-83 amino acids 3729 to 4083 (355 residues), 245.5 bits, see alignment E=1.6e-76 PF00550: PP-binding" amino acids 589 to 650 (62 residues), 55.5 bits, see alignment (E = 1.1e-18) amino acids 1645 to 1706 (62 residues), 52.5 bits, see alignment (E = 9.7e-18) amino acids 2715 to 2776 (62 residues), 54.7 bits, see alignment (E = 2e-18) amino acids 4246 to 4310 (65 residues), 56.8 bits, see alignment (E = 4.4e-19) PF00668: Condensation" amino acids 677 to 1120 (444 residues), 379.7 bits, see alignment E=3.9e-117 amino acids 1731 to 2177 (447 residues), 362.2 bits, see alignment E=7.8e-112 amino acids 2797 to 3228 (432 residues), 256.5 bits, see alignment E=8.9e-80 amino acids 3258 to 3708 (451 residues), 310.1 bits, see alignment E=5.1e-96 TIGR01733: amino acid adenylation domain" amino acids 1163 to 1561 (399 residues), 437.6 bits, see alignment E=1.3e-134 amino acids 2218 to 2624 (407 residues), 417.2 bits, see alignment E=2e-128 amino acids 3750 to 4158 (409 residues), 403.6 bits, see alignment E=2.6e-124 PF13193: AMP-binding_C" amino acids 1545 to 1619 (75 residues), 31.7 bits, see alignment (E = 4.7e-11) amino acids 2608 to 2688 (81 residues), 42.7 bits, see alignment (E = 1.8e-14) amino acids 4142 to 4219 (78 residues), 44.1 bits, see alignment (E = 6.6e-15) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 3097 to 3250 (154 residues), 154.8 bits, see alignment (E = 5.1e-49)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZV34 at UniProt or InterPro

Protein Sequence (4336 amino acids)

>Psyr_1945 Non-ribosomal peptide synthase:Amino acid adenylation (Pseudomonas syringae pv. syringae B728a ΔmexB)
MDAFELPDTLAQALQRRALHTPDRLALRFLTDENDQGLVLTYRDLDLRARTIAAALQRQA
VPGDRAILLFHSGPDYVAAFFGCLYAGVIAVPAYPPESNRRHHQERLLSIIADAEPRLLL
TGADLQPALLQMDELAAADAPPLLCVDTLPAAPAQEWQGPQLQADDIAFLQYTSGSTALP
KGVQVTHGNLVANESLIRHGFGIDANPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCILM
APAYFLARPLRWLEAISEYGGTISGGPDFAYQLCSARVSDSALERLDLSRWRVAYSGSEP
IREDSLRAFADKFASCGFTPDSFMASYGLAEATLYVAGGKRGKGIPSLRLNAQALARNVV
EPGDGQPVMSCGTGQPGHGVLIADPVSLQVLGENQVGEVWASGPSIAHGYWRNPEATARA
FVQHAGQTWLRTGDLGFQRHGELYITGRLKDMLIVRGHNLYPQDIEKLIESEVDVVRKGR
VAAFAVTQDGSEGIGIAAEISRSVQKILTPDALIKIIRQTVAEAFQEAPSVVVLLNPGAL
PKTSSGKLQRSACRTRLADGSLDSYAVFPASDSTLAGCAPSSGSDLQAQIATVWCEQLQC
EQVSADDHFFLLGGNSIIATQVVARLRETLGIDLNLRLLFEAPTLAAFAAQVETLQTAAS
QGDSQTQSAIARLPGNEHLPQSMAQNRLWFLWQLDPHSSAYNVPGGLHLRGELDSTALRS
SFQRLIERHESLRTRFYEQDGVALQRIDAPSEFHLDTLDISDLPGAERQARAVAIREQQA
RLPFDLQHGPLLRVTLLRLDEEEHQLLVTLHHIIADGWSLNVLIDEFSRLYASAVQGQTL
ELAPLPLRYADYGQWQREWLANGEAERQLTYWQQQLGGEQPVLTLNTDHPRSARQQHSAS
RYSLRLSAELSAAVRNTAQAWQSTSFMFLLAGFQTLLHRYSGQADIRVGVPGANRPRHET
QGLIGFFINTLVLRAQLDPRLPFSTLLAQTRQAALEAQAHQDVPFEQLVEAFPRAREHGL
FQVMFNHQQRDLGALRRLPGLLAEELPWHSREAKFDLQLHSEEDRNGRLTLCFDYADELF
EHHTIVAMAQHYVRLLTQVSQQAQLALGDVQLLSAEEQEQQAQWSAAPCAPATLWLPELL
NHQARQTPERIALVWEGGSLDFASLHTQANRLAHYLRDKGVGPDIKVAIAAERSPQLLIG
LLAILKAGGAYVPLDPDYPMDRLAYMLQDSGVELLLTQSHLLGDLPSAEGVCTVAMDTLH
LDNWPVSAPRLNLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQDTYALDESDVL
MQKAPISFDVSVWECFWPLITGCRLLLAGPGEHRDPQRIAQLINAYSVTTLHFVPPLLQL
FIDEPLAQQCNSLRRLFSGGEALPGELRNRVLEQLPGVQLHNRYGPTETAINVTHWQCRI
SDGLRSPIGRPLGNVLCRVLDSELNPLPRVVAGELCIGGIGLARGYLRRPGLTAERFVAD
PLGQAGERLYRTGDLVRWAADGALEYLGRLDQQVKLRGFRVEPQEIEARLLAQPGVGQAA
VLLRETVAGPQLIGYYTAEAGQNVEAERIKSALALELPDYMVPAQLVRLDSMPLSPSGKL
DRRALPEPQWQTREHVEPQTDLQKQIAAVWRQVLGVPRVGLRDDFFELGGHSLLATQIIS
RVRQACDIDLPLRTLFEASELGAFAAQVEAIQQSGARSSLQPIARVDRSQPVPLSYSQQR
MWFLWQMEPDSPAYNVGGMARLKGVLNIECFEAALQALILRHETLRTTFPSINGVACQRV
SEQSDLRVQWQDYSALPVEARQQRIQALADSEAHQPFDLETGPLLRAFLVKASDLEHYFV
LTLHHIVTEGWAMDIFARELGQLYEAFLEGRPSPLEPLAVHYLDYSVWQRQWMEAGERQR
QLDYWTAQLGNEHPLLELPADRPRPPVQSHQGELYRFDLNADLAAKVRAFNARNGLTLFM
TMTATLAVLLYRYSGQNDLRIGAPVANRIRPESEGLIGAFLNTQVLRVQLDGQMSVAQLF
EQVRHTVIEGQSHQDLPFDHLVEALQPPRSAAYNPLFQVMCNVQRWEFQQSRELAGMTVE
YLVNDARATKFDLNLEVTELDHRLGCCLTYSTDLFDEPRIAQMAEHWLNLLQALLADPQQ
RLSELPLLQETERQHLLDSLGVEAGEQRLDQCIHSLFAEQAHRRADAPALTFAGQTLSYA
ELDAKANQLAWMLRERGVGPQIRVGLALPRSLDMVVGLLAILKAGGAYVPLDPEYPLERL
HYMIEDSGVGLLLSDRALFAALGELPAGVARWCLEDDQPSLASFSSDELPFISLPQHQAY
LIYTSGSTGKPKGVVVSHGEIAMHCQAVIRRFDMRPDDCELHFYSINFDAATERLLVPLL
SGARVVLRAQGQWDAEEICTLIRQQQVNILGFTPSYGSQLAQWLATQGQTLPVRMCITGG
EALTGEHLQRIRAVFQPELLFNAYGPTETVVMPLASLAPQQLEEGEASVPIGRVVGARVA
YILDADLALVPQGASGELYIGGAGLAQGYHQRPGMTAERFVADPFASNGGRLYRTGDLVR
QRADGLVEYLGRIDHQVKIRGFRIELGEIETRLLEHAAVREAIVLALDTPSGKQLAGYLV
SDVAGQGDEQQAQWRESLKSHLKAQLPDYMVPTHLILLDSMPLTANGKLDRRALPAPDPG
LNRQHYVAPASELEQQLAAIWCAVLNVEKVGLNDNFFELGGDSILSIQVVSRARQLGIHF
SPRDLFQHQTVQTLAAVATTRELIQAEQGLLDGNSGLTPIQHWFFDTPIPERQHWNQSLL
LEPLSALHPNLLAQALRALLEQHDALRLSFTEHEGTWQAEHRAVTADTLLIQAQVSDMAE
CAALYADTQRSLDLHNGPLLRALLVDGPQGQQRLLMVIHHLVVDGVSWRVLLDDLQNAYR
QLRDATPVRFAAKTSAFRDWAARLQAYAGNESLREELHVWQRQLGGSATSLPCHNPQGGR
QNRHAQTVSVRLDAERTRQLLQQAPSAYRTQVNDLLLTALAQVVCRWSGQPSTLIQLEGH
GRENLFDDIDLTRTVGWFTSAYPLRLTPAPAADSAPGESIKAIKEQLRQVPHKGLGYGVL
RYLADSASQAAMQALPVAPITFNYLGQFDQSFADDALFRPLQESPGAAHDPQAPLPNELS
IDSQVYGGELLLRWTFSAERYEPAAIEALAQDYLRQLQTLIAHCLADGSGGLTPSDFPLA
ALDQAQLDALPVPPSQIEDVYPLTPMQEGMLLHTLLEPGTGLYYMQDRYRIDSALDPQRF
AQAWQAVIARHEALRASFCWNIGETMLQVIHKPGSTPIDYLDWRDVPAEKQEPHLQALLK
SEREAGFALLDQPPFHLRLIRVDEARYWFMMSNHHILIDAWCRSLLMNDFFDIYTALGEG
RDAQLAPAPRYRDYIGWLQRRGLTQARDWWRDNLRGFERPTPIPSDRPFLREHAGDSGGM
VVGDCYTRLDERDGAQLRELAQQHQLTVNTFAQAAWALTLRRMSGDRDVVFGVTVAGRPV
ELPQMQRTVGLFINTIALRVGMPADDQRCSVRQWLGQLLDSNMQLREYEYLPLVTIQENS
ELPKGQPLFDSLFVFENAPVEVSVLDRAQSLNATSDSGRTHTNYPLTAVCYPGDDLGLHL
SYDQRYFDESTVQGMLGEFKRLLLALVEGFHGDMAELALVSEQERAFLIDGCNQSDHAYP
LDKSYVELFEAQVAAHPERIAVSCLDRQLSYAALNIASNRLGHALIEAGVGFDQPVAVLA
ERGVELPGMIIGSFKAGAGYLPLDPALPNSRLSDIIGQSATPLLVCSAECLEQGRALLDA
LPEASRPQLRVWEDLQQSDSAQHNPGRYSAPDNLAYVIFTSGSTGLPKGVMVEQHGMLNN
QLSKLPYLSLSDRDVIAQTASQSFDISVWQFLAAPLFGARVDIVPNDIARDPQALLAHVQ
AQRISVLESVPSLITRLLAEPHAALDSLRWMLPTGEAMPPELASQWLQRYPQIGLVNAYG
PAECSDDVAFFRVDAQSTRSAYLPIGSPTDNNRLYLLDDALDLVPLGAVGELCVAGAGVG
RGYVADPQRTVPVFVPHPFGAPGERLYRTGDLARRRKDGVLEYVGRVDHQVKIRGYRIEL
GEIETRLLELPAIRESVVLDVAGPLGKVLAAYLVPRSTAQDHEALRDEVRNHLKASLPDY
MVPTHLVLLEAMPLTPNGKLHRKALPAPDVSLVQQDYQAPQTEMEQQLATIWADVLKVER
VGITDNFFELGGHSLLATQVVTRAQKRLQRNVPLRAMFEFNTVQALAQHLESLGGAQVDE
QKFDRLADLMAELEGL