Protein Info for Psyr_1942 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 174 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF08332: CaMKII_AD" amino acids 42 to 164 (123 residues), 102.7 bits, see alignment E=3.4e-33 TIGR02246: conserved hypothetical protein" amino acids 42 to 164 (123 residues), 78 bits, see alignment E=3.1e-26 PF14534: DUF4440" amino acids 45 to 155 (111 residues), 44.4 bits, see alignment E=4e-15 PF13474: SnoaL_3" amino acids 47 to 163 (117 residues), 37.1 bits, see alignment E=7.2e-13 PF12680: SnoaL_2" amino acids 50 to 147 (98 residues), 29.9 bits, see alignment E=1.4e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1942)

Predicted SEED Role

"FIG00959942: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZV37 at UniProt or InterPro

Protein Sequence (174 amino acids)

>Psyr_1942 conserved hypothetical protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MKTKLTALALLLAVSAPMVHAAAEPSGYTYRMVAETPSNVNDKEIAGLFDRWNKALQTGN
STTVASLYAPDAVLQPTVSNKVRATPAEIKDYFDKFLALKPIGEINYREIRRLGPDAAAD
NGVYTFTLTAPDGKKTKVQARYSFLYHRVGNEWKILNHHSSAMPEVQPEYQVSR