Protein Info for Psyr_1788 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 16 to 36 (21 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 85 to 108 (24 residues), see Phobius details amino acids 114 to 131 (18 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 219 to 238 (20 residues), see Phobius details amino acids 251 to 273 (23 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details amino acids 306 to 329 (24 residues), see Phobius details amino acids 341 to 361 (21 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 332 (309 residues), 123.1 bits, see alignment E=6.3e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1788)

Predicted SEED Role

"Arabinose efflux permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZVI7 at UniProt or InterPro

Protein Sequence (399 amino acids)

>Psyr_1788 Major facilitator superfamily (Pseudomonas syringae pv. syringae B728a ΔmexB)
MSRFETAGNVQTKPASWWAVGSVSLGSFATVTTEFLPVGLLPDIARDLGTSISQTGLMMA
VPGILAAISAPSCIALFSHVDRKRLLLGLLSILLASNLIVALSTHFWLTLAGRVLLGFAL
GGFWTIAGSLGPRLRPGKEGVKATAYVLAGVSIGTVAGIPAGTLIGEAFGWRAAFETAAV
VTVAVGVLIATFLPALPGERSAGISQMLSLAGEQRIRRMFAAALLIYVGHFAAYTYLAPF
VQEFAHIQGQALGALLFAFGLAAVAGNLAGGALAARSAPSSVLIMTLLMLGSLTALLMFV
GNPWLLWPVILVWGFAFGMIPITTQIWCFEASNDRVEGVQALLVCVVNLSIGGGAFIGGA
VSARAGFTAAIVIGAVCAALSMLTVMLAMRNSKPVSCTD