Protein Info for Psyr_1700 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Glycosyl hydrolase, BNR repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 transmembrane" amino acids 32 to 52 (21 residues), see Phobius details PF14870: PSII_BNR" amino acids 108 to 157 (50 residues), 32.1 bits, see alignment 1.2e-11 amino acids 156 to 281 (126 residues), 52.8 bits, see alignment E=5.9e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1700)

Predicted SEED Role

"FIG002465: BNR repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZVS4 at UniProt or InterPro

Protein Sequence (369 amino acids)

>Psyr_1700 Glycosyl hydrolase, BNR repeat protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MSCPAPALDNSHLIIIRAEKSMRESFHRRTRLYAGMSLAVVTSSLFALPAMAGSEALATA
VAADAPVYAIESAKASRALLLDVAHAGARLVVVGDHGHILLSDDQGMTWSQARVPTRQLL
TAVFFVDEQHGWAVGHDAQVLASSDGGKSWNKQFEDLKREAPLLDVWFKDLDNGLAIGAY
GLLLSTADGGQHWEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEK
IDGPYQGSLFGVIGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASAT
LLANGSLVLVGNGGSVMRSTDDGETFAVFNRPDRISLAGVTGNSQGNLILVGQGGVRLTS
STGADTTQQ