Protein Info for Psyr_1313 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 TIGR02421: conserved hypothetical protein" amino acids 15 to 406 (392 residues), 444.1 bits, see alignment E=2.3e-137 PF08014: MATCAP" amino acids 36 to 410 (375 residues), 450.6 bits, see alignment E=2e-139

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1313)

Predicted SEED Role

"FIG00953322: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZWV8 at UniProt or InterPro

Protein Sequence (425 amino acids)

>Psyr_1313 conserved hypothetical protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MDEYQQTIRALSDRIVVAQTPIRILDAVKWDENVRKEFLAAKGKALPAVDRAYYENRPLG
FDSSALKQEFQNIERDVTRQLGQFNPVGQIMRRMCREYRMVVRMLEARGTSDFGLISQEL
YGAASDAFHAGDPTLADLGLMLSDYLNNIAGRGDLKDEPKTLTAKDAVSLLQSRLNRVFG
EAEETIRVFESDGIVADAAAGADYIKIRTDAMFNERDVRALEVHEGLVHVGTTLNGQNQP
ICTFLSKGPPSSTVTQEGLAILMEVIAFASYPSRLRKLTNRTRAIHMAEQGADFLQVFEF
YQEQGFGMSESYGNASRVFRGSVPNGLPFTKDLSYLKGFIMVYNYIQLAVRKGKLEQVPL
LFCGKTTLEDMRTLRQLVDEGLVVAPKYLPEQFRDMNALSAWMCFSNFLNHLSLDRIEAD
YSNIL