Protein Info for Psyr_1209 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: type III secretion protein HrcQb

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 132 PF01052: FliMN_C" amino acids 60 to 129 (70 residues), 47.1 bits, see alignment E=9.2e-17

Best Hits

Swiss-Prot: 92% identical to HRCQB_PSESY: Type III secretion protein HrcQb (hrcQb) from Pseudomonas syringae pv. syringae

KEGG orthology group: K03225, type III secretion protein SctQ (inferred from 100% identity to psb:Psyr_1209)

Predicted SEED Role

"type III secretion protein HrcQb"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZX59 at UniProt or InterPro

Protein Sequence (132 amino acids)

>Psyr_1209 type III secretion protein HrcQb (Pseudomonas syringae pv. syringae B728a ΔmexB)
MSTEDLYQDDVEMLDDYEEPVPEQADQQPHDDEHAEQAFGYADEPEHEKQSGDHHESPML
DSLELDLTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEGR
LGLQITRLVARS