Protein Info for Psyr_1174 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Sugar transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 473 transmembrane" amino acids 23 to 49 (27 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 127 to 149 (23 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 188 to 211 (24 residues), see Phobius details amino acids 268 to 292 (25 residues), see Phobius details amino acids 307 to 330 (24 residues), see Phobius details amino acids 338 to 361 (24 residues), see Phobius details amino acids 367 to 392 (26 residues), see Phobius details amino acids 404 to 426 (23 residues), see Phobius details amino acids 434 to 454 (21 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 14 to 465 (452 residues), 375.4 bits, see alignment E=2.1e-116 PF00083: Sugar_tr" amino acids 28 to 467 (440 residues), 376.1 bits, see alignment E=4e-116 PF07690: MFS_1" amino acids 33 to 415 (383 residues), 125.5 bits, see alignment E=3.5e-40 PF06609: TRI12" amino acids 68 to 217 (150 residues), 28.7 bits, see alignment E=7.2e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1174)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZX94 at UniProt or InterPro

Protein Sequence (473 amino acids)

>Psyr_1174 Sugar transporter (Pseudomonas syringae pv. syringae B728a ΔmexB)
MSSSSTSAAAGQQGRQRAASNRLIFISVLVATMGALAFGYDTGIIAGALPFMTLPADQGG
LGLDAYSEGMVTASLIVGAAFGSLASGYISDRFGRRLTLRLLSVLFIAGALGTAIAPSIP
FMIAARFVLGIAVGGGSATVPVFIAEIAGPSRRARLVSRNELMIVSGQLLAYVLSAVMAA
LLHTPGIWRYMLAVAMVPGVLLLVGTFFVPASPRWLASKGRFDEAQDVLEQLRPSKQDAQ
REVDEMKAQDEEARHRPKARELLRQRWVIKLLLIGVGLGFTAQFTGVNAFMYYTPIILKN
TGMGTNAALTATIGNGVVSVIATLLGIWAIGRYGRRHLLMTGLVIVILMQAALGCVLQFM
PQNMTQSYTALACILVFLLFMQMCISPVYWLLMSELFPMQVRGLLTGTAVSMQWLFNASV
AFTFPIAVDTIGNPTFFIFAAINIGSLIFVFLCLPETKGKSLEQIEKHLKKEL