Protein Info for Psyr_1140 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Disulfide bond formation protein DsbB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 169 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details PF02600: DsbB" amino acids 12 to 157 (146 residues), 132.7 bits, see alignment E=7.2e-43

Best Hits

Swiss-Prot: 100% identical to DSBB1_PSEU2: Disulfide bond formation protein B 1 (dsbB1) from Pseudomonas syringae pv. syringae (strain B728a)

KEGG orthology group: K03611, disulfide bond formation protein DsbB (inferred from 100% identity to psb:Psyr_1140)

Predicted SEED Role

"Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation" in subsystem Biogenesis of c-type cytochromes or Periplasmic disulfide interchange

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXC8 at UniProt or InterPro

Protein Sequence (169 amino acids)

>Psyr_1140 Disulfide bond formation protein DsbB (Pseudomonas syringae pv. syringae B728a ΔmexB)
MSDNTLYLRREKRFLVLLGIICLALIGGALYMQVVLDEAPCPLCILQRYALLFIAIFAFI
GAAMPGRRSVTAFETLVTLSALGGIAAAGRHVWILAHPSDSCGIDVLQPIVDGLPLATLF
PTGFQVSGFCTTPYPPVLGLSLAQWALTAFVLTAVLVPACIIRNRRKPY