Protein Info for Psyr_1125 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: GGDEF domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 269 to 283 (15 residues), see Phobius details amino acids 297 to 318 (22 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 333 to 497 (165 residues), 165.4 bits, see alignment E=4.6e-53 PF00990: GGDEF" amino acids 336 to 494 (159 residues), 157.7 bits, see alignment E=1.1e-50

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_1125)

Predicted SEED Role

"GGDEF domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXE3 at UniProt or InterPro

Protein Sequence (509 amino acids)

>Psyr_1125 GGDEF domain protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MMVFAFSRQARLRWTRPELILIFGSSVSMLAILAIVASLLARERDDAAQTAARAASNIVR
LIDADVMRNAELYDSSLQGMISAWQRPDLQQLSPELRQLVLFDRATAASYKGDLVLLDNR
GEILADSLSVIPRQDNFSDRAYFKDHATDRSLTLHVSAPYKTRWGYKDWCISFSRRISGP
DGEFMGIVSAAMRLVYFKHLFMSQNLGSESSINLINTSGILIVRYPEMEGQDLIGKDYSH
SPNFQRILQEGDGSFAAMSTQLNARRLYTFSRVGNLPLIVVIGQSEDEVYAVWRRNAWLV
GSATSVLCLGILWLTWLLCRELRRRHRAEDALASLAATDGLTGLDNRRQLDEAMEIEWAR
AQRSGKPLSLLMIDVDHFKAFNERHGHQGGDEALRLIAQTISYCIRRPGDRVARYGGEEF
VVVLPETDLPGAMLIAEKIRKAAESLPLFRNAEHPITVSIGVASEVVRQGDKLEAFFGVA
DKALYQAKDNGRNRVEYRSSVARKVTDQV