Protein Info for Psyr_1096 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 954 transmembrane" amino acids 747 to 763 (17 residues), see Phobius details TIGR00461: glycine dehydrogenase" amino acids 16 to 945 (930 residues), 1517.6 bits, see alignment E=0 PF02347: GDC-P" amino acids 16 to 440 (425 residues), 601 bits, see alignment E=1.9e-184 amino acids 453 to 734 (282 residues), 39.4 bits, see alignment E=5.5e-14 PF21478: GcvP2_C" amino acids 774 to 895 (122 residues), 206.5 bits, see alignment E=1.4e-65

Best Hits

Swiss-Prot: 90% identical to GCSP1_PSEPF: Glycine dehydrogenase (decarboxylating) 1 (gcvP1) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K00281, glycine dehydrogenase [EC: 1.4.4.2] (inferred from 64% identity to adk:Alide2_2543)

MetaCyc: 59% identical to glycine cleavage system P protein (Chlamydomonas reinhardtii)

Predicted SEED Role

"Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)" in subsystem Glycine and Serine Utilization or Glycine cleavage system or Photorespiration (oxidative C2 cycle) (EC 1.4.4.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.4.4.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZXH2 at UniProt or InterPro

Protein Sequence (954 amino acids)

>Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit (Pseudomonas syringae pv. syringae B728a ΔmexB)
MTDRIELTTANEFIARHIGPRAADELAMLQTLGFDSIEALSESVIPESIKGTSVLNLPAG
QSEADALASIKAIASKNQLFKTYIGQGYYNTHTPAPILRNLLENPAWYTAYTPYQPEISQ
GRLESLLNFQTLISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKASQQFFASSHCHP
QTLDVLRTRAEPLGITVVVADEHELGDVSDYFGALLQYPASNGDVFDYRELVERFHAANA
LVAVAADLLALTLLTPPGEFGADVAIGSAQRFGVPLGFGGPHAAYFSTRDAFKRDMPGRL
VGVSVDRHGKQALRLAMQTREQHIRREKATSNICTAQVLLANIASMYAVYHGPRGLTQIA
NRVHQLTAILAEGLSTLGLNAEQAFFFDSLTLHTGDRTAALHAAARARHINLREIDDQRL
GLSLDETTSQSAVETLWAIFANDGQSLPDFAALADSVQSRLPAGLLRQSAILSHPVFNRY
HSETELMRYLRKLADKDLALDRTMIPLGSCTMKLNAASEMIPVTWAEFGNLHPFAPAEQS
AGYQQLTDELEAMLCAATGYDAISLQPNAGSQGEYAGLLAIRAYHQSRGDEHRDICLIPS
SAHGTNPATANMAGMRVVVTACDARGNVDIEDLRAKAVQHRDQLAAIMITYPSTHGVFEE
GIREICGIVHDNGGQVYIDGANMNAMVGLCAPGKFGGDVSHLNLHKTFCIPHGGGGPGVG
PIGVKSHLAPFMPGHARMERKEGAVCAAPFGSASILPITWMYIRMMGGEGLKRASQLAIL
NANYISRRLEEHYPVLYTGSNGLVAHECILDLRPIKDSSGISVDDVAKRLIDFGFHAPTM
SFPVAGTLMIEPTESESREELDRFCDAMIKIREEIRAVENGTLDKDDNPLKNAPHTAAEI
VGQWSHPYSREQAVYPVDSLIENKYWPPVGRVDNVFGDRNLVCACPSIENYQEA