Protein Info for Psyr_0832 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Two-component sensor kinase CbrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 984 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 156 to 173 (18 residues), see Phobius details amino acids 185 to 209 (25 residues), see Phobius details amino acids 241 to 260 (20 residues), see Phobius details amino acids 275 to 298 (24 residues), see Phobius details amino acids 324 to 353 (30 residues), see Phobius details amino acids 376 to 393 (18 residues), see Phobius details amino acids 399 to 422 (24 residues), see Phobius details amino acids 429 to 451 (23 residues), see Phobius details amino acids 471 to 493 (23 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 633 to 748 (116 residues), 32.4 bits, see alignment E=4.4e-12 PF00989: PAS" amino acids 635 to 678 (44 residues), 25.5 bits, see alignment (E = 1.7e-09) PF00512: HisKA" amino acids 758 to 819 (62 residues), 44.2 bits, see alignment 2.4e-15 PF02518: HATPase_c" amino acids 865 to 975 (111 residues), 87.8 bits, see alignment E=1.1e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0832)

Predicted SEED Role

"Two-component sensor CbrA: intrcellular carbon:nitrogen balance"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZY82 at UniProt or InterPro

Protein Sequence (984 amino acids)

>Psyr_0832 Two-component sensor kinase CbrA (Pseudomonas syringae pv. syringae B728a ΔmexB)
MPMSFSLTQMLLVSAAYLLVLFGVAWVSEHGLIPRWIIRHPLTYTLSLGVYASAWAFYGT
VGLAYQYGYGFLSSYLGVSGAFLLAPVLLYPILRITRTYQLSSLADLFAFRFRSTWAGAL
TTVFMLIGVLPLLALQIQAVADSIGILTREPVQDRVAVAFCALITLFTIFFGSRHIATRE
KHEGLVFAIAFESLIKLIALGGVGLYALYGVFDGPQQLELWLLQNQTALASLHTPLQEGP
WRTLLLVFFASAIVMPHMYHMTFTENLNPRSLVSASWGLPLFLLLISLAVPLILWAGLKL
GATTSPEYFTLGIGIAANSKSLALLAYIGGLSAASGLIIVTTLALSGMALNHLVLPLYQP
PAEGNIYRWLKWTRRGLIVAIIALGYGFYLMLGAQQDLANLGIVAFVATLQFLPGVLSVL
YWPTANRRGFIAGLLAGISVWAVSMLLPLIGNLQGFYIPWLNMIYVLDDTSWHMAAIASL
AANVLLFTLISLFTNASPEEAGAAEACAVDNVRRPQRRELHAVSPQEFATQLAKPLGAKA
AQKEVEQALRDLYLPFDERRPYALRRLRDRIEANLSGLMGPSVAQDMVETFLPYKSGSEK
YVTEDIHFIESRLEDYHSRLTGLAAELDALRRYHRQTLQELPMGVCSLAEDQEILMWNRA
MEELTGIVAQRVVGSRLETIAEPWKSLLTGFTSLPDEHLHKQKLGLDGQTRWLNLHKAAI
NEPLAPGNSGLVVLVEDLTDTQMLEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQ
NLREEREEDGELKEISSQILEQTKRVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIG
LLALNRRNFEVHFYNLCNPEHWAVGDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEH
TVDLIVEDEGSGISKAIMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPAD
PEQQRGTRIRVTLPRHVDATSTAN