Protein Info for Psyr_0611 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 PF00005: ABC_tran" amino acids 47 to 177 (131 residues), 70.2 bits, see alignment E=1.5e-23

Best Hits

KEGG orthology group: K09691, lipopolysaccharide transport system ATP-binding protein (inferred from 100% identity to psb:Psyr_0611)

Predicted SEED Role

"Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)" in subsystem Rhamnose containing glycans or Teichoic and lipoteichoic acids biosynthesis (EC 3.6.3.40)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.40

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZYU1 at UniProt or InterPro

Protein Sequence (234 amino acids)

>Psyr_0611 ABC transporter (Pseudomonas syringae pv. syringae B728a ΔmexB)
MSRVVIKAENLTKQFVLRHNRGGLKKRFLGLFDARYRERAETFTAVSDVSFTLHKGESLA
LVGHNGSGKSTLLQLVSRILLPTSGRLTSVGRVAPLIEIGVGFHPELTGEENIYLNASLF
GLSNKEVRSRFNEIVDFSGLGNFIDTPVKNYSSGMYMRLGFSVAVHVEPQTLLADEVLAV
GDEDFKRKCHERIRMMQDDGMALILVTHAVEEGKEFCQRYLTLERGLMTEHGYY