Protein Info for Psyr_0515 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: HI0933-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 5 to 45 (41 residues), 29.3 bits, see alignment 3.7e-10 PF12831: FAD_oxidored" amino acids 5 to 160 (156 residues), 42.1 bits, see alignment E=4.4e-14 PF01134: GIDA" amino acids 5 to 35 (31 residues), 21.6 bits, see alignment (E = 6.4e-08) PF01266: DAO" amino acids 5 to 87 (83 residues), 30.8 bits, see alignment E=1.4e-10 PF00890: FAD_binding_2" amino acids 5 to 50 (46 residues), 37 bits, see alignment 1.4e-12 PF03486: HI0933_like" amino acids 5 to 390 (386 residues), 332.1 bits, see alignment E=1.2e-102 TIGR00275: flavoprotein, HI0933 family" amino acids 6 to 389 (384 residues), 431.2 bits, see alignment E=1.8e-133 PF13454: NAD_binding_9" amino acids 7 to 160 (154 residues), 25 bits, see alignment E=1e-08 PF13450: NAD_binding_8" amino acids 8 to 39 (32 residues), 28.7 bits, see alignment (E = 8.1e-10) PF22780: HI0933_like_1st" amino acids 188 to 337 (150 residues), 159.1 bits, see alignment E=5.2e-50

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 100% identity to psb:Psyr_0515)

Predicted SEED Role

"FIG00953568: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZ37 at UniProt or InterPro

Protein Sequence (392 amino acids)

>Psyr_0515 HI0933-like protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MPVTDVVIIGAGAAGLMCAFTAAARGRKVMLIDHANKPGKKILMSGGGRCNFTNMYTEPA
NFLSQNPHFCKSALARYTQWDFIAMVAKHGVPYHEKKLGQLFCDNKSSDILEMLLEECRQ
AGVSLHMDTAVQQIEKTDDGYSLQTTLGTLNCQSLVIATGGLSIPTLGATGFGYQVGKQF
GHTLLPTRAGLVPFTITDQLKELCTELSGTSVDCLVSCNDTSFRENILFTHRGLSGPAIL
QISSFWQPGDTVEINLLPDHDVPAWLNQQQAERPNSELKTLLGEIFTKKMANLIAEHWFV
SRPMKQYTHAELAEIAEKLASWQVVPAGTEGYRTAEVTLGGIDTREVSSKTMESLKSPGL
YFVGEVLDVSGHLGGFNFQWAWASAYAAAHYV