Protein Info for Psyr_0503 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: conserved domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1044 PF20178: DUF6543" amino acids 46 to 330 (285 residues), 161.8 bits, see alignment E=3.6e-51 PF04488: Gly_transf_sug" amino acids 847 to 884 (38 residues), 27.7 bits, see alignment (E = 5.5e-10)

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0503)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZ49 at UniProt or InterPro

Protein Sequence (1044 amino acids)

>Psyr_0503 conserved domain protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MDDEFAAHYDFDDADRAGDDDSDAAFRKRVDEDFSVSDYFRLNPINLQSPAALAARDVAQ
ECQSRWGVEIDPDDTLIATLYIEDPRLYPAPHRANVVHSMTLTQALLRNWQQKGNGNWFD
HLGHLQPHSDGGFDCQVVDEKLLASDCVAYEAIYRKTSPQRYDATTQLGINAEAFKQYIW
DHNLQSGYIAYLKQFWHAHGEDYNLMLKAGLFKAAWLQADENTLKAEHKAMVLEALGLPG
DQGWKTLSFDDFVAAPIATRVTISELLVHGYSAVDIMVIRSADSPTVLLYIPGNSSPIHA
FKNADELKEWVALMCRDPGKRRSLEAHFSAADDLDGFFYSGVATALKGFAVYPKLLDSAT
GAWNPRKLVQFGEPLQPWPFSHFKTRVRAKSEIDALQKIRSHGDYWKEEASSGLSECVSV
LGGVAIVFPELMPVVAGLSLALVGLGVDAAVNGHTLEERQAGLGRIAFGVLNALPILGEE
GEAVEAGVETGLVDETGGGYEVPGASTEIDPVIDIEPAPVFRPEPPALRSLDKKMRRLLR
ALEAPQELPGLASGEVAGIYPLEGKRYIELHDRAFRVEWVPQEKQYRIRSAADPRVWGPY
VKTVDTGYWDLDLKLGLRGGESFDGTQLPPASEAESVVVPVVPGEPKIEVQRWAPKLQVE
LPMDGISIEEVLSQSRGTVIEKYFVQVRGEKTNVYYDPDIRCWRTDPSDRDGLVWLDRDG
VWNRGSKDTFQKLEANLPQSQRFEFYTFPRVPSLPADAKPISRIVHHIWMGERTPGADLL
EKMLSNMRTSPDLRFQLHIDIDDPAADQQLFDYFFEQPQMHISRLKEEAFYPDFLSGENG
EAFNYFRHSDNRNYAAASDILRYRLIDEYGGIYVDCDDTINVPFAKFPLKAGPNDVLLGR
ELQAEHLGYKGPGNSHFGSHPNNPVLKQMLKEIKVRFDSEKQINEAFFSTRRPYIDRTDD
ATKAASKARMTPYMTRISDLTGPKLMSDVLRRLRPDCFDLLARSYLPPDQVLSVIYEAYL
KDTVDFYFPFKATAKITPGSANEW