Protein Info for Psyr_0492 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1992 PF01627: Hpt" amino acids 10 to 99 (90 residues), 34.2 bits, see alignment 4.8e-12 amino acids 629 to 722 (94 residues), 47.5 bits, see alignment 3.5e-16 amino acids 782 to 880 (99 residues), 43.6 bits, see alignment 5.9e-15 amino acids 924 to 1023 (100 residues), 26.9 bits, see alignment 9.6e-10 amino acids 1088 to 1178 (91 residues), 50.9 bits, see alignment 3.1e-17 amino acids 1231 to 1331 (101 residues), 50.1 bits, see alignment 5.5e-17 PF02518: HATPase_c" amino acids 1574 to 1709 (136 residues), 53.1 bits, see alignment 8.4e-18 PF01584: CheW" amino acids 1716 to 1847 (132 residues), 84.4 bits, see alignment 1.2e-27 PF00072: Response_reg" amino acids 1873 to 1984 (112 residues), 102.3 bits, see alignment 3.6e-33

Best Hits

Predicted SEED Role

"still frameshift probable component of chemotactic signal transduction system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZ60 at UniProt or InterPro

Protein Sequence (1992 amino acids)

>Psyr_0492 Response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt (Pseudomonas syringae pv. syringae B728a ΔmexB)
MADRHDYVALEWLKGEIAETLRQARQALDGFIEDPANAAAMAECLNLVHQVHGSLQMIEF
YGAALLAEEIEQLALAVQQNRVSHPIESEQLLIQAMSQLPVYLERIHSARRDLPLVVLPL
LNDLRSARGESLLSETSLFAPQLVVVPALDEQELARRNTPELPNLLRKLRQTLQAALAGL
MREQGVQTQLGYMAKVFARLEQLCEDAPLGALWRIASALVETMLNGNFTNSPALRSLLKD
ADKELKRLAEQGVTGINQPAPEELLKSLLFYIAKSDSLAPKMLDLKDQYALADALPGNDV
VNEERARMAGPDRDAMRSVIVALCEGLVRVKERLDVFVRGDRQHVSELNALLPPLRQIAD
TLAVLGFGQPRKVIIDQLSVVLGLAQGQREPSDAALMDVAGALLYVESTLAGMAGSHEQV
SREESRLPTTDLTQIHQLVIREARTVLQQAKDVILDYIDGAWDRQRLDPLCALIVQVRGA
LAMIPLARAASLLAACNEYIQEHLLVDETRPTWVQLDCLADTITGIEYYLERMLEDHQAP
GDQVLDMAQQSLARLGYTPAADTLDVPLLEEVITQDELLELDDRKALVSPTQTIAQVLAS
PVSAVNPPARNVPASLLPPSAGEEAVDDELRDVFLEEADEVLDALREYLPRWFTSLGSDG
HWDSTALTEVRRAFHTLKGSGRMVRALILSELAWAVENLLNRVLEGDVLPGLEVQQLMTE
VQALLPSVIRDFAEGAQCQRDDVDLLAARAHALANGLEPPMLPAADDHVPGQPVADEPLD
PQLLEIFRQEALGHLNTLGRFLDNAEQSASPAISDAVLRALHTLKGSAHMAGVLPIAELA
SPLDQLVREYKANLIDIGSPELALLRSAEPLLHKGLEQLDSTPLADIPGAAPLIEAALAM
LNDRLTVVLRESDSGLRIKRNPTLLAGFLAEGMDIVLDAENLLQRWRQHPGERQELSALL
DELTTLGHGAHLADLPQVDELCEALLDLYGAVEESSLAVSERFFDVAENAHEALINMLDQ
VAAGQDVEPRPECVRALNQLLDQALDPSATGLVKSDGHRTLSVTELNAATAQLASEAGHT
EVAGPDDEIVEIFLEEAVDILDSAGQALQRWLADPENPAPLASLQRDLHTLKGGARMAEV
AEVGDLAHELENLYEGLIDRRFNHSPTLAALLNESHDHLAILLEQLYRQEALSDPSALIE
ALRSCRTLESAGPEVQASPAAHEDLPEHDAELREVFLEEGFDIMESSGAALARWQADPHN
MLEVENLLRDLHTLKGGARMVEIAPIGDLAHELETLYEGLSAGSLQPAPLMIGLLQSGQD
VLADMLDAVRNEKPLPDASLLIESIRRLATDEPSGAQLAAQDPEVHPESVVAVAPVAEGE
VERSGPEMVKVPAEQLEDLVNLAGETSIFRGRIEQQIIDSQIALVEMETTIERMRDQLRR
LDMETQGRILSREQVQTERLGYEEFDPLEMDRHSQLQQLSRALFESASDLMDLKETLGAR
ARDAETLLSQQARVNTQLQEGLMRTRMVPFERLVPRLRRVVRQVASELHKKVHFEVGNAD
GEMDRNVLERMVAPLEHMLRNAVDHGLESTEKRIAAGKPEQGHISLELMYEGGDMVIELS
DDGSGVDLAAVRRKAIKRGMIHPDADLSDHEVLPFILQAGFSTSEIITQISGRGVGMDVV
HAEVKQLGGSMVIDSVPGKGTRFRIRLPISVSVNRALMVTCGEEQYAVPLNTVDGIVRVM
ANELDGYYQTSPPRYQYGGRSYELRYLGELLGSSPPRLAGQLQPLPVLLVHLQDQWVAVQ
VDALAGSREIVVKSLGPQFSRVQGISGATILGDGQVVLILDLMAQIRNLQGLPFRGLMAP
AYHEVEHARPLLVMVVDDSVTVRKVTSRLLERHGMHVLTAKDGVDAMTLLQEHTPDIMLL
DIEMPRMDGFEVASQIRQDEQLKDLPIIMITSRSGQKHRDRAMAVGVNEYLSKPYQETVL
LESIAYWSQAHV