Protein Info for Psyr_0463 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Gluconate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 5 to 23 (19 residues), see Phobius details amino acids 29 to 51 (23 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 103 to 129 (27 residues), see Phobius details amino acids 140 to 158 (19 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 266 to 287 (22 residues), see Phobius details amino acids 298 to 322 (25 residues), see Phobius details amino acids 335 to 357 (23 residues), see Phobius details amino acids 376 to 394 (19 residues), see Phobius details amino acids 398 to 416 (19 residues), see Phobius details amino acids 422 to 441 (20 residues), see Phobius details amino acids 460 to 484 (25 residues), see Phobius details PF02447: GntP_permease" amino acids 6 to 210 (205 residues), 223.7 bits, see alignment E=4e-70 amino acids 261 to 481 (221 residues), 215.3 bits, see alignment E=1.4e-67 PF03600: CitMHS" amino acids 30 to 425 (396 residues), 51.4 bits, see alignment E=9.2e-18

Best Hits

KEGG orthology group: K03299, gluconate:H+ symporter, GntP family (inferred from 100% identity to psb:Psyr_0463)

Predicted SEED Role

"Gluconate permease" in subsystem D-gluconate and ketogluconates metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZ89 at UniProt or InterPro

Protein Sequence (485 amino acids)

>Psyr_0463 Gluconate transporter (Pseudomonas syringae pv. syringae B728a ΔmexB)
MTPLMLMVVAGAGIALLLFLVLKYKFQPFVALMLVSIIVALVAGVKPADLVATIEGGMGK
TLGHIAIIIALGAMIGRVIELSGGAEALAKTLINRFGNKRTPLALTVAGFMVGIPVFFEV
GVIILMPLAYGVARAARKPLLIFALPMCAALLAVHAFLPPHPGAVAAASQLGADLGRVLM
LGIPIVAVLCMIGYFVAGRMTRKTYPMTDDIRAEVYGPHVTNEDLEAWARNDYSAVREAS
ETRTMGVEESASSLASKLPPAPAPGFGLIIALILLPIVLILMGTLATTMLPATSTLRAVL
TVLGAPLVALLIDTLLCAWLLGSRRGWSRTQVSDVIGSALPGVAMVILIAGAGGVFGKVL
VDTGIGAVVSEALRNTGLPVLALGFLLTLLLRAVQGSTTVALVTTAGILSPLIATLDLSA
NHLALLCLAMGGGGLAMSHINDAGYWMFTKLAGLNVADGLRTWTVLVTLLGTLGFVITLL
LWPFV