Protein Info for Psyr_0066 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: bifunctional spore maturation protein, fused SpmA/SpmB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 6 to 31 (26 residues), see Phobius details amino acids 43 to 64 (22 residues), see Phobius details amino acids 95 to 119 (25 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 204 to 231 (28 residues), see Phobius details amino acids 233 to 255 (23 residues), see Phobius details amino acids 278 to 298 (21 residues), see Phobius details amino acids 351 to 375 (25 residues), see Phobius details amino acids 386 to 408 (23 residues), see Phobius details PF07670: Gate" amino acids 51 to 159 (109 residues), 40.3 bits, see alignment E=2e-14 amino acids 276 to 379 (104 residues), 46.3 bits, see alignment E=2.6e-16

Best Hits

KEGG orthology group: None (inferred from 99% identity to pst:PSPTO_0121)

Predicted SEED Role

"Fused spore maturation proteins A and B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q500N2 at UniProt or InterPro

Protein Sequence (413 amino acids)

>Psyr_0066 bifunctional spore maturation protein, fused SpmA/SpmB (Pseudomonas syringae pv. syringae B728a ΔmexB)
MLNGLWLGFFVVATISALVQWLVGGNAGIFAAMVESIFAMAKLSVEVMVLLFGTLTLWLG
FLRIAEKAGIVDWLAKVLGPLFLRLMPEVPPGHPALGLITLNFAANALGLDNAATPIGLK
AMRSLQELNPSKTAASNAQILFLVLNASSLTLLPVTIFMYRAQQGAPDPTLVFLPILLAT
SVSTIVGLLSVAFMQRLRLWDPVVLAYLIPGALLLGTFMAFLGTLSAAALAGLSSILGNL
TLFGLIMMFLIIGTLRKVLVYEAFVEGAKEGFDVAKSLLPYLVAMLCAVGVLRASGALDF
GLEGIRHLVQWLGLDTRFVDALPTAMVKPFSGSAARALLIETMQTQGVDSFAALAAATIQ
GSTETTFYVLAVYFGAVGIQRARHAVGCALLAEFSGVVAAIFVCYWFFGATAS