Protein Info for PfGW456L13_99 in Pseudomonas fluorescens GW456-L13

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1405 transmembrane" amino acids 397 to 418 (22 residues), see Phobius details PF20178: DUF6543" amino acids 23 to 289 (267 residues), 148.6 bits, see alignment E=1.3e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QDE4 at UniProt or InterPro

Protein Sequence (1405 amino acids)

>PfGW456L13_99 hypothetical protein (Pseudomonas fluorescens GW456-L13)
VAAKEATKVSWQAQNQVDRMLGKLQDAESFAQPLLTNALKKQFGVVVDVREIFLRLYFSA
KTSAWAFNVTGGVGSRTVSLLNASLQNFAEGEVFTSDSAFITRPDDIGRFEIKKLGITIE
QFKTLCRTLDIGSQYKKYLESYLAPEGAMVREAVQHRIVASQKSAMKAAAHLALMKKDIG
AAAYLTVLNMVLGKKGLVWDGGPVRFYHLSMLDTRLTGIVLIAADLDTPGANVRRVIAYV
PHDPEHPLKEYASTAEFALELTHQLRGNDQASGASRRSYQAFFSRFVDHYQRGHFFAALN
AKLWEITYHGTQPGSNLPAWRETQVDRPDLRIAAVSFENDTVSRYNGDPWVYLYQQQVDK
IFADGRALAVTTADADSAARWAWIENLEKMLSDIMQVALLVATPFVPVLGELMLGYIAYQ
LVDGVVEGVVELTQGEYVEAAEHLVGVAENLVQLGTFAVGGAIATQVVKPRLSSFLEGAR
QVTLRNGEQRLWGKNLQPYLQQNLRLATDSKPDLYGLHQHQGRKILSLDDDHFELRFDSQ
TGKHRVQHPTRPEAYQPVAESNGTGAFVIEGETPHTWDADALIKRLGPSVEGLTDKFGDI
RTVSRADVGALVRMYADNERAIPLLSDTVTRFRIDRDIHTFIQNIGSARAQDYLQADPLW
QFQLLDGLWPGRAIELKGADGRVLYAIGVDDEPVSFSVNQLADTDLIDTLLLFLDDAETR
QLLGDEPDAPVGSRTQNATRLRGQLAQLADRRKASLFDKRYRDVGQAASAEARFIQGEVP
GIPGVVAQELVALARPEELQELKLRRLPERLQGCADWALRDVRISRAYEGFYLESVDNPD
FDALALHSLENLPGWNANVRIELRHYRFDGQQLDSIGPEDAAIRRTLVLSENGVFQACDE
QGNALHSGGDMFTSILQALPDVERDALRIHIGQGPVLKAALRDHALKPYRLLSVLSGLPE
LKIPTFDPAIMRLRGGAPTVTGEIAQLQDVERRGVVFVDGAFHPSVPSFERYNYLRGLKL
MEESLPDDCFKLLWDGLNKANADGSNLRTVQSIEVLPDLQKLMPPEQFKALVERLFTKHG
LVELTESERNLGARARDLEQTGRLDDYQALQRAVRENLPVSSDRWVPLQKYAADLESDVT
TAAQPIEVTPQVMANLRQAQRAIHRAKELLPLSGNQLPSIWENGGSAIAKIKGLRGLDLQ
QGQFTAQLSLAEHARKAIEIKGGNCSENSKVTFALLASQPRTSRIHLVKATAFDHQYVVI
GDDLTDLKQLVVADSWPEFPAAHTADNGQFKFELPPIATLEPGPASADFAFINDVPAGPT
ALPEVSRDNTIRQITVNKLYKSGAYAQFTSLKTLATRYSLPGEAWVSFERLPVSVIEKRL
SAWRDYQHAFRNLLEQQSAGTSPGE