Protein Info for PfGW456L13_92 in Pseudomonas fluorescens GW456-L13

Annotation: Leucine-rich repeat domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1713 transmembrane" amino acids 460 to 486 (27 residues), see Phobius details amino acids 507 to 526 (20 residues), see Phobius details PF20178: DUF6543" amino acids 46 to 250 (205 residues), 106.3 bits, see alignment E=4.4e-34 amino acids 312 to 366 (55 residues), 42 bits, see alignment (E = 1.9e-14) PF14496: NEL" amino acids 1377 to 1609 (233 residues), 140.9 bits, see alignment E=8.9e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QI24 at UniProt or InterPro

Protein Sequence (1713 amino acids)

>PfGW456L13_92 Leucine-rich repeat domain protein (Pseudomonas fluorescens GW456-L13)
MKTLETLRPEIPEWYSAAREIDRQYLKELIEEQGRLQGTLDKTLGNLQHDINAFAKPLLS
ASMQANFNTVENFDALSVQLEVPNKIAFVIDTGASRVRQSTLLEAALHNFEEAETTEDAW
RSSSGIYRKDERGSLALEPAISLPRFASMCRSLDIGGQYQRHIKSILLPTTAEARRALQD
ESVASEKAAFQVASLVARLKGDISDHAYGKLGQIRESQADTTLYDRPLHGHRLSLMGFRL
TGIVLFSAVSDPSQIKQAIDALTPDSVKFWSEWSQRLSILPGAEYERFKLLQAFFANGPQ
GLNDELLRRDDIYHQSRLSGHVIAYVPDDPQHPLKEYPSLAAFMKTLIGQLRDTQYQAFF
SRFVAQKDKGLFFSRVNERLKTFTWQQREPLDMGPWWRETAVENPDAEPVTNQITGDLWV
TLFVERRDKAIVDARRIAVPTGDEDASARFKRLTSYLNIGWNLFNFAAMLVPGLGEAMLG
IMIAQMLAEVAEGIEDWSKGDKEEASAYFNGVLINFAQLALMGAGHGLPGGQLTPIKVSP
FVEGLKPVEVAGKQRLWNPDLTSYQQSVTLPRDGVVGEKGLYRHQDQDLLHLDDKCYEVK
QDPNTGQHRLQHPSRADAYQPLLEHNGTGLWKTELDQPLEWDRRQLLQRLGASVDGFSDE
TLEQILTVSGVNENALRRLHVEHETPPALLTDTLKRFKAYADAEACAEQILADRVGQEWA
DLAVRFMTELPGWPEGKAIEVFQGPGLSGAAFKEGYAGALPADTLQMTWQDLLAGALPAR
VVGFLDEQALREMLGQWFSGDKTARTKALRDRLAEQARGSKRRLFDKLYERRERADDPRV
SLLKGHESSLSTSVAQALVEHAHPSDLQHWAEKQRVPLRLSQQAFEAADQLRVARAYEGL
YLGELHNTDTERLELHSLAALPGWPSDLRLEIRERSFSGTLLDSLGPQDAPIRRVLIQSS
DLRYEARDAGDQHLHGLDNLYAAVLHALPDSQRVALGFEIHDAAGLEQAVKTKPLDRAVL
EPILRDNPVLKPSYDPTVMRLRGGMPGYAQQVPRGMGLRRRARSLYPAFTPEEIETLLTG
FSQNGGSVHEGLAALEAELNQLNRAMQRWMNSPTESFRFSPAGVAQWHARNNIYKALRQC
WQRTGPEGIEASGIMRPQALKLDNIPKLSQLLETLPRLEANFDHVTSLSLRGGQLRSGNM
SFLDSFHQVRYLNLQDNLLTAIPQGLKDMRHLTDLFLNDNRIEMDVLAVDRLKNLTRLRS
LGLRGNPLKLIPDVSRMPHLQVLILSDAGLDSWPVGLFSQSRPRSIFIDLSRNPINRIPE
VAPGSFRAELLARTVISRGPHWISPENLDILKSYIESVGMDPERPYPPRGVLDSSEWAAG
MTERQWQEKQEVWNAVEDEFDSVPFFNEVRKLTQSADFKAGDTYQSELTAKVWRMLEAMA
SDTELRIKLFNEAATPTECVDGGTQLFNAMGVQVMVHEAYALVRADLIETQLLELALGKS
RLDELGAIARHRVSERLAKGEQFRRTGADGEVTGTIDEVEVHLAYMTDLAQRLDLPWQAR
GMQFRSIAEVSKEMIEAALQRIKALEEGDLLIDRVFEQPLWKSWLESTYREELNGLKRRI
DATTDLQDALQRRAEGTRLTTEEKAAVELEIKGLCSELDKPETDFADGRLMTEEAYGQAL
NDIDRQITQQLKNLTQEAMTRARLDRLRIGADQ