Protein Info for PfGW456L13_860 in Pseudomonas fluorescens GW456-L13

Annotation: Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 transmembrane" amino acids 9 to 26 (18 residues), see Phobius details amino acids 39 to 58 (20 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details PF02600: DsbB" amino acids 7 to 157 (151 residues), 110.8 bits, see alignment E=4e-36

Best Hits

Swiss-Prot: 60% identical to DSBB2_PSEPF: Disulfide bond formation protein B 2 (dsbB2) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K03611, disulfide bond formation protein DsbB (inferred from 60% identity to pfo:Pfl01_5483)

Predicted SEED Role

"Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation" in subsystem Biogenesis of c-type cytochromes or Periplasmic disulfide interchange

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QFK1 at UniProt or InterPro

Protein Sequence (183 amino acids)

>PfGW456L13_860 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation (Pseudomonas fluorescens GW456-L13)
MSLACSRSLFFMAFIAGALAMGVSYYLEYAVGLRPCGLCLVQRFCLALLTGVCLMASVHG
PGRIGNVLYWLFSLCCSLAGTVTAWRQVLLQSLPAEQVAACSTHLADLLANSPWLSVVQQ
MFKGAADCVEISWTLFDLSLTEWSLLLFVAMMILAVYQSLRLVWTGYQRPLSGESSHRAF
AGD