Protein Info for PfGW456L13_786 in Pseudomonas fluorescens GW456-L13

Annotation: Sodium/glutamate symport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 36 to 55 (20 residues), see Phobius details amino acids 67 to 85 (19 residues), see Phobius details amino acids 93 to 118 (26 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 275 to 296 (22 residues), see Phobius details amino acids 301 to 325 (25 residues), see Phobius details amino acids 335 to 357 (23 residues), see Phobius details amino acids 369 to 396 (28 residues), see Phobius details TIGR00210: sodium/glutamate symporter" amino acids 3 to 397 (395 residues), 580.9 bits, see alignment E=5.7e-179 PF03616: Glt_symporter" amino acids 3 to 366 (364 residues), 499.9 bits, see alignment E=1.8e-154

Best Hits

Swiss-Prot: 69% identical to GLTS_SHIFL: Sodium/glutamate symporter (gltS) from Shigella flexneri

KEGG orthology group: K03312, glutamate:Na+ symporter, ESS family (inferred from 87% identity to ppw:PputW619_4228)

MetaCyc: 69% identical to glutamate:sodium symporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-122

Predicted SEED Role

"Sodium/glutamate symport protein" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QKH6 at UniProt or InterPro

Protein Sequence (402 amino acids)

>PfGW456L13_786 Sodium/glutamate symport protein (Pseudomonas fluorescens GW456-L13)
MLQLDFYGTLVAASLVLLLGRGLVTRVGFLRAYNIPEPVAGGLVVALVLLALRGIDVEVR
FDTSLQTPLMLAFFATIGLSADFASLKKGGRVVGVFILAVTGLLLVQNAMGIGLASLLGL
DPLMGLLTGSVTLAGGHGTGAAWGATFSEKYGLASASELAMASATFGLVLGGLIGGPVAR
HLIKRVQVPGCVDQEKPRVPKGFEQPNKERSITPFSFIETLALIAVSLLAGTLLNEMLHG
SAFELPTFVCVLFVGVLLRNGLSALGLYQVFEREVSVLGNVSLSLFLAIALMSLKLWDLA
ALALPIFIILAAQTLVMALFAIFVTFRVMGSNYDAAVLAAGHCGFGLGATPTAIANMQAV
TQRYGPSQIAFLVVPMVGAFFIDIINVIVIKLYLALPFFAAA