Protein Info for PfGW456L13_523 in Pseudomonas fluorescens GW456-L13

Annotation: Membrane-fusion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 37 to 254 (218 residues), 135 bits, see alignment E=1.4e-43 PF16576: HlyD_D23" amino acids 51 to 246 (196 residues), 42.3 bits, see alignment E=8.1e-15 PF13533: Biotin_lipoyl_2" amino acids 54 to 99 (46 residues), 35.7 bits, see alignment 8.6e-13 PF13437: HlyD_3" amino acids 150 to 242 (93 residues), 62.3 bits, see alignment E=9.6e-21

Best Hits

KEGG orthology group: None (inferred from 86% identity to pfo:Pfl01_0145)

Predicted SEED Role

"Membrane-fusion protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293PWR9 at UniProt or InterPro

Protein Sequence (259 amino acids)

>PfGW456L13_523 Membrane-fusion protein (Pseudomonas fluorescens GW456-L13)
MRIFCVLGLGSVLVASAVQAQTPGADDPLAQMDAGASTATSAEARGVLRARDQAVLASEV
PGRIVELPFSEGESFKKGDTLARFDCSAYQAQLNAAQAASRGAGEELAHNRRLAALNSVG
RFEVARAEAKVSETQAQSQVYQVQVKRCSVQAPFDGQVVERKVQRYESVPAGAPLLDVVD
NRTLEIHLLVPSRWMARLKPGQTFSFVPDETGKPLDATVKRLGARIDEGSQTLLLVASVP
DASGLLAGMSGTAHFAEFK