Protein Info for PfGW456L13_5122 in Pseudomonas fluorescens GW456-L13

Annotation: PAP2 superfamily protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 transmembrane" amino acids 7 to 31 (25 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 118 to 135 (18 residues), see Phobius details amino acids 175 to 193 (19 residues), see Phobius details amino acids 204 to 224 (21 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details PF01569: PAP2" amino acids 119 to 248 (130 residues), 37 bits, see alignment E=1.3e-13

Best Hits

KEGG orthology group: None (inferred from 76% identity to pfo:Pfl01_0730)

Predicted SEED Role

"PAP2 superfamily protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QUJ5 at UniProt or InterPro

Protein Sequence (275 amino acids)

>PfGW456L13_5122 PAP2 superfamily protein (Pseudomonas fluorescens GW456-L13)
MQTASRFYWVNFGIPLACAVAVFLMFDMISIDIAFNNYFFDPVTQTYPLDQVHLFEKITH
KWARIIPNWTGEMAIIGALLSFLWPRLKTEKHSKIIAFLEKIKVAPVLRFANRHRRDFLY
VVFAFSISTGVIHYLKGHTSVYCPIETTLYGGKLEHIEWYENFDLLKVAGEGRCWPGGHA
SGGFTMLALYFVARRYRWRYSKAIMYGSLTLGFIYGTTRVLQGWHYMSHTFWAGIFVWLA
CLLTALAFYGRARLEQPVLSKAQQPVAATQIQAAN