Protein Info for PfGW456L13_5108 in Pseudomonas fluorescens GW456-L13

Annotation: Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF04355: BamE" amino acids 35 to 99 (65 residues), 93.3 bits, see alignment E=3.2e-31

Best Hits

Swiss-Prot: 91% identical to BAME_PSEFL: Outer membrane protein assembly factor BamE (bamE) from Pseudomonas fluorescens

KEGG orthology group: K06186, small protein A (inferred from 93% identity to pba:PSEBR_a760)

Predicted SEED Role

"Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QXA3 at UniProt or InterPro

Protein Sequence (175 amino acids)

>PfGW456L13_5108 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex (Pseudomonas fluorescens GW456-L13)
MQNTKLLLTSFTFVGLLALAGCSFPGVYKIDIQQGNVVTQDMIDQLRPGMTRKQVRFIMG
NPLLTDTFHADRWDYLYSLQPGGGERQQERISVIFNPNDQLVSLSGDFMPGVSRDEAILG
KDSGTTVAAPAENVEKPKPEKPVKPGSLLDQIQKDVDGVETVPVPTPEPLDTSPQ