Protein Info for PfGW456L13_5058 in Pseudomonas fluorescens GW456-L13

Annotation: Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF00005: ABC_tran" amino acids 30 to 182 (153 residues), 128 bits, see alignment E=4.1e-41 PF08352: oligo_HPY" amino acids 233 to 298 (66 residues), 73.8 bits, see alignment E=1.2e-24 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 233 to 317 (85 residues), 97 bits, see alignment E=2.7e-32

Best Hits

Swiss-Prot: 61% identical to DPPF_ECOLI: Dipeptide transport ATP-binding protein DppF (dppF) from Escherichia coli (strain K12)

KEGG orthology group: K12372, dipeptide transport system ATP-binding protein (inferred from 96% identity to pfl:PFL_0874)

MetaCyc: 61% identical to dipeptide ABC transporter ATP binding subunit DppF (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

"Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QW17 at UniProt or InterPro

Protein Sequence (326 amino acids)

>PfGW456L13_5058 Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) (Pseudomonas fluorescens GW456-L13)
MAVVLTARDLTRHYEVSRGLFKGHATVRALNGVSFELEAGKTLAVVGESGCGKSTLARAL
TLIEEPSSGSLKIAGQEVAGADKAQRKQLRKDVQMVFQSPYASLNPRQKVGDQLAEPLLI
NTNLSAAERREKVQAMMKQVGLRPEHYQRYPHMFSGGQRQRIALARAMMLQPKVLVADEP
TSALDVSIQAQVLNLFMDLQQEFNTAYVFISHNLAVVRHVADHVMVMYLGRPVEMGTKED
IYSRPLHPYTQALLSATPAIHPDPDKPKIKIVGELPNPLNPPSGCAFHKRCPYATERCST
EEPALRLIAGRQVACHYAEQFLDGAA