Protein Info for PfGW456L13_5047 in Pseudomonas fluorescens GW456-L13

Annotation: ABC transporter, ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 transmembrane" amino acids 39 to 59 (21 residues), see Phobius details amino acids 79 to 101 (23 residues), see Phobius details amino acids 162 to 180 (19 residues), see Phobius details amino acids 185 to 187 (3 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 278 to 298 (21 residues), see Phobius details PF06472: ABC_membrane_2" amino acids 33 to 301 (269 residues), 203.1 bits, see alignment E=8.7e-64 PF05992: SbmA_BacA" amino acids 38 to 351 (314 residues), 137.3 bits, see alignment E=1.3e-43 PF00005: ABC_tran" amino acids 387 to 521 (135 residues), 63.8 bits, see alignment E=4.1e-21

Best Hits

KEGG orthology group: K02471, putative ATP-binding cassette transporter (inferred from 89% identity to pfo:Pfl01_0822)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293Q725 at UniProt or InterPro

Protein Sequence (575 amino acids)

>PfGW456L13_5047 ABC transporter, ATP-binding protein (Pseudomonas fluorescens GW456-L13)
MNQNAEYSAVNDAVRGQFFRKVWAMITPYWRSEEKVKAWTLLIAVIALSLISVGISVWFN
TWYKDFYNALQQKDEEAFWRLILYFCGIAAVAIVGAVYRLYLTQMLTIRWRAWLTEKHFT
RWLGDKNYYQLEQGGYTDNPDQRISEDLNNFTSNTLELGIGLLRNIVSLVSFSIILWGVS
GSIEVFGITIPGYMFWCVLVYAVVGSWLTHLIGRRLIGLNNQQQRFEADLRFSMVRIREN
AESIALYNGEPNENRRLSSRFGMVWHNFWDIMKVSKRLTFFTAGYSQAAIIFPFMVAAPR
YLSGKIELGELMQISSAFGNVQESFSWFISAYQSLASWRATCDRLLSFHQAMRDNEERAP
AIDVQNSGSVLKVHNLGLDLAEGRHLLTNADMTVKEGERVMLSGRSGSGKSTLLRAMGHL
WPTGHGSIRLPSARYLFLPQKPYLPIGTLRDVLSYPQPGDTYPNERYAQVLETCRLPHLI
ARLDEANHWQRMLSPGEQQRLAFARALLYAPQWLYMDEATSAMDEEDEATLYQALIDELP
GLSIVSVGHRSSLKRFHPRHIRIENGHLVDQAVTA