Protein Info for PfGW456L13_504 in Pseudomonas fluorescens GW456-L13

Annotation: Outer membrane component of tripartite multidrug resistance system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 13 to 468 (456 residues), 264.7 bits, see alignment E=7.9e-83 PF02321: OEP" amino acids 68 to 257 (190 residues), 61.4 bits, see alignment E=5.2e-21 amino acids 288 to 466 (179 residues), 78.7 bits, see alignment E=2.6e-26

Best Hits

KEGG orthology group: None (inferred from 90% identity to pfo:Pfl01_0174)

Predicted SEED Role

"Outer membrane component of tripartite multidrug resistance system" in subsystem Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293PWQ8 at UniProt or InterPro

Protein Sequence (482 amino acids)

>PfGW456L13_504 Outer membrane component of tripartite multidrug resistance system (Pseudomonas fluorescens GW456-L13)
MSKASGLAVTGLGLLLSACQVVGPDYHLPEEAAVHRPDFQGDLAVDGKTVVSAPVPADWW
RLYEDPRLDQLVQQAMASNTDLRVAAASLSRSRAQVDEAEAAGGWSGGVQMGAQRLQESG
QAFLIPEKVPVANIGDIGISASYQFDLFGTLQRGIEAAKANADATQAAADTARITVVADV
VRAYTQVCAANEEREIAQHSLDLQAQSTTLIQRLRDAGRGDETQVTRSQTQFKSLRADMP
RYEASRQAGLYRLSMLLAKPVDQLPAGTATCDELPKIAQLVPVGDGAALLKRRPDVRQAE
RRLAAATAGIGVATGELYPNISIGATIGTVGILDDLGDPSTNRWGFGPSLTWNVPTNGAR
ARIREAEAVTQATLAHFDGVVLNAIRETQTGLAQYTALLQRRDALADAEQSAKLAADQTH
RFFQAGRASFLADLQATRTYIDVTAQLAAANTQVAASQIDLFLALGGGWESGRTQASNSG
KP