Protein Info for PfGW456L13_5028 in Pseudomonas fluorescens GW456-L13

Annotation: FIG005080: Possible exported protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1267 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 1215 to 1234 (20 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 10 to 1265 (1256 residues), 1124.4 bits, see alignment E=0 PF13116: DUF3971" amino acids 515 to 793 (279 residues), 163.9 bits, see alignment E=6.1e-52 PF13502: AsmA_2" amino acids 1016 to 1260 (245 residues), 174.6 bits, see alignment E=2.6e-55

Best Hits

KEGG orthology group: None (inferred from 85% identity to pfo:Pfl01_0843)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QU97 at UniProt or InterPro

Protein Sequence (1267 amino acids)

>PfGW456L13_5028 FIG005080: Possible exported protein (Pseudomonas fluorescens GW456-L13)
MDRLTRILAALTRWGLGLCALVLVLMALYVSLGRELTPLVAEYRADIETKASDALGMPLQ
IGELEGNWSGFAPILMARDVTVGDGANALHLDQVRAVPDLWASLLARQVRIAHLEFSGLK
INLRQVEGGQWALEGLPMRQDQPTDPEQLLNQMQMIQQLSVLDSQVTLQPFGESPLTLTY
VGLNLKTGASRQRLDARLTLPDGQPVAMSLRTRIRASQWKDGEAEVYLSLPQSDWSKWLP
ERLTQQWNFSEIKAGGELWVTWGKGALQSAAVRVNAPQLKGAYAERKPIQINNLALNGYF
QRSAKGASVTLDSLAMNFGETRWETHLQLTQNAATDKTEELWHLQADRVDLTPLTPLLNA
LAPLPEGFATVVERLKVTGGLRNVLIDFRPNATDDSKFGFAANLDQVGFDAYHGAPAARN
VSGSISGDLGHGELRMDSKDFMLHLDPIFAKPWQYIQANARLTWKLDKEGFTLIAPYLKV
LGEEGKIAGDFLIRLYFDHTREDYMDLRVGLVDGDGRYTAKYLPTVLSPALDEWLRTAIL
KGAVDQGFFQYQGSLSPGAADVDRSISLYFKVHDAELAFQPGWPHVSKVSGDVFVEDSGV
RILASKGQLLDTQVNDIYVDIPHVPAGQNVHLFLDGGFSGGLGDGLKILQEAPIGTAATF
AGWEGEGDLQGKLKLDIPLAKGEEPKILVDFKTAKARLKLAEPALELTQLKGDFRFDSGK
GLTGQNISARAFDKPVTAQIFADGSPGKHSTRVAASGQVEVKKLTDWLKVTQPLPVSGVI
PYQLQLTLDGADSQLMVNSSLKGVAVDLPAPFGITSEAGRDTTFRMTLQGDERRYWVNYG
DLASFTFAAPASSFADGRGELFLGGGESVLPGTKGLRIRGVLSELDVGPWKDLVGRYAGQ
DPGGSARQLLSGADFKVGKLSGIGTTLDQASIQLARKPSAWALQLDSQQINGSASLPDAK
ATPITINLQTVRLPAPDPTVLADENSPDPLASVDPTKIPAMDITINQLFQGQDLVGGWSL
KIRPTPKGIEFNSLDLGLKGMLLVGSGGWEGVPGASNSWYKGRISGKNLADVLKGWGFAP
SVTSQDFYMDVDGRWPGSPAWVATKRFSGTLDATLNQGQFVEVEGSAQALRVFGLLNFNS
IGRRLRLDFSDLFGKGLSYDRVKGLLVGTNGVYVTRKPIQLTGPSSTIELDGTLNMVADQ
IDAKLMVTLPVTNNLPIAALIVGAPAVGGALFLIDKLIGDRVARFASVKYTVKGPWKEPK
IAFDKAF