Protein Info for PfGW456L13_4898 in Pseudomonas fluorescens GW456-L13

Annotation: Inner membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 transmembrane" amino acids 16 to 33 (18 residues), see Phobius details amino acids 39 to 56 (18 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 96 to 117 (22 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 223 to 242 (20 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details amino acids 285 to 302 (18 residues), see Phobius details amino acids 314 to 334 (21 residues), see Phobius details PF03601: Cons_hypoth698" amino acids 18 to 316 (299 residues), 244.2 bits, see alignment E=7.9e-77

Best Hits

Swiss-Prot: 55% identical to Y845_CHLTE: UPF0324 membrane protein CT0845 (CT0845) from Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)

KEGG orthology group: None (inferred from 81% identity to acd:AOLE_06120)

Predicted SEED Role

"Inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QRN7 at UniProt or InterPro

Protein Sequence (336 amino acids)

>PfGW456L13_4898 Inner membrane protein (Pseudomonas fluorescens GW456-L13)
MSAIALTRIHTRTRELAPGLIVSLIVAAAASFLSEHYGAPVMLFALLLGMALNFLADDGP
CKAGIEFTARTVLRIGVALLGMRITLEQMAALGWKPIALVVILVVVTISVSVIAAKALGF
QRLFGMLTGGATAICGASAALALAAALPNHPQKERATLFTVIGVSALSTLAMIVYPMIAN
WLQLSPQVAGVFLGATIHDVAQVVGAGYSMSTETGDTATVVKLMRVAMLLPVIVTAAMIT
RMQGADPTGKRPPLLPWFAVGFLILACINSTGWIAPAVQGSVNELSRWCLVISISALGMK
TRLRELAAVGIKPILLMVGETVFLVVLVLLLLRWGL