Protein Info for PfGW456L13_4892 in Pseudomonas fluorescens GW456-L13

Annotation: FIG005548: transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 839 transmembrane" amino acids 35 to 56 (22 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details amino acids 258 to 279 (22 residues), see Phobius details amino acids 287 to 308 (22 residues), see Phobius details amino acids 314 to 332 (19 residues), see Phobius details amino acids 358 to 379 (22 residues), see Phobius details amino acids 390 to 415 (26 residues), see Phobius details amino acids 451 to 472 (22 residues), see Phobius details amino acids 657 to 673 (17 residues), see Phobius details amino acids 680 to 702 (23 residues), see Phobius details amino acids 709 to 729 (21 residues), see Phobius details amino acids 751 to 774 (24 residues), see Phobius details amino acids 781 to 807 (27 residues), see Phobius details PF03176: MMPL" amino acids 608 to 809 (202 residues), 46.7 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: K07003, (no description) (inferred from 70% identity to psa:PST_0618)

Predicted SEED Role

"FIG005548: transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QVI3 at UniProt or InterPro

Protein Sequence (839 amino acids)

>PfGW456L13_4892 FIG005548: transport protein (Pseudomonas fluorescens GW456-L13)
MGNIKQDAMPVIRELRDFDHRSGNLLERLVFNYRPLFMLLMALATVVLGFMAVTRLELRP
SFEKMIPQSQPYIQNFLENRQSLRGLGNSVRVVVENTQGDIFDPDYLDVLKQVNDQLFLT
EGVDRAWMKSLWSPAVRWTEVTEDGFQGGPVMPDTYSGQPEQIEQLRQNISRAGVVGSLV
ASDFKSTMLIVPLMDKAAAGGQRINYHAFSQMLEEQLRDKIEYAGDSAARKSGVEGTGHY
KVRVIGFAKLMGDLIDGLIQVMMFFGLAVVTSLIIIYAYTRCVRSTLLVVGCSLIAVVWQ
LGIVAWLGYAIDPYSVLVPFLIFAIGVSHAAQKMNGIMQDIARGTHKLIAARYTFRRLFI
AGVTALLADAVGFAVLMLIDIPVIQDLAITASIGVAVLIFTSLLLMPVALSYVGVGAKAA
ERALKIDNRAEHHKGFGKLWDLLDRFTTRKWATGAVLVAVLMGIGGFMVSLNLKIGDLES
GAPELRADSRYNRDNAYITSHYALSSDLFAVMIKTAPEGCLNYKTLVLADRLAWELQQYP
GVQATASLVNAVRQITAGTYEGNPKLNSIQRNQDVLNYAAQQASVNSPELFNTDCSLMPV
ITFLKDHKAETLDAVVAIADKFAKENSSEDRQFLLAAGTAGIEAATNIVVREANRTMLLY
VYAAVTLFCLITFRSWRATLVALLPLVLTSILCEALMVAMGIGVKVATLPVIALGVGIGV
DYALYLLSVQLHFQRQGLPLSQAYRNAVSFTGRVVGLVGITLAAGVVCWVWSPIKFQADM
GILLTFMFLWNMLGALILIPALSYFLLRERAPKPGSVAATENTESTERPGMPHAVTTSE