Protein Info for PfGW456L13_4859 in Pseudomonas fluorescens GW456-L13

Annotation: Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details TIGR03300: outer membrane assembly lipoprotein YfgL" amino acids 8 to 380 (373 residues), 443.3 bits, see alignment E=2.8e-137 PF13360: PQQ_2" amino acids 63 to 111 (49 residues), 22.9 bits, see alignment 9.6e-09 amino acids 79 to 309 (231 residues), 180.1 bits, see alignment E=8.8e-57 amino acids 292 to 381 (90 residues), 23.1 bits, see alignment E=8e-09 PF01011: PQQ" amino acids 70 to 104 (35 residues), 24.6 bits, see alignment 2.3e-09 amino acids 111 to 146 (36 residues), 29 bits, see alignment 9.2e-11 amino acids 150 to 182 (33 residues), 20.1 bits, see alignment 6.1e-08 PF13570: PQQ_3" amino acids 129 to 168 (40 residues), 30.4 bits, see alignment 6.1e-11 amino acids 237 to 263 (27 residues), 18.4 bits, see alignment (E = 3.8e-07)

Best Hits

Swiss-Prot: 72% identical to BAMB_PSEAE: Outer membrane protein assembly factor BamB (bamB) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 94% identity to pba:PSEBR_a939)

Predicted SEED Role

"Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QWI9 at UniProt or InterPro

Protein Sequence (383 amino acids)

>PfGW456L13_4859 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) (Pseudomonas fluorescens GW456-L13)
MRDVIRWKHAALLALAILAAGCSSNSKKELPPAELVDFKEEVVLHKQWSRSIGDGQGETY
NMLVPAIDGDTIYAADVTGVLMAMDRNTGDVKWKKDLELPVSGAVGVGYGLVTIGTIKGE
IVALDAINGEEKWRARVSSEVLAPPANNGDVVVVQTQDDRLIGLDASTGDRRWIYDSTPA
VLTLRGTSAPIVTNRLAVAGLSTGKVVAVDISNGVPVWEQRVAIPQGRSELERVVDIDGG
LLLSGETLYVASYQGRVAALDLQSGRQLWQRDASSYAGVAQGFGTVYVTLSSGTVEGVDE
RSTTALWSNDSLARRQLSAPEVFSSYVAVGDLEGYLHLLSQVDGRFVGRERIDSDGLRAR
PLVVGDTIYVYGNSGKLEALTIK