Protein Info for PfGW456L13_4793 in Pseudomonas fluorescens GW456-L13

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1557 transmembrane" amino acids 456 to 478 (23 residues), see Phobius details PF20178: DUF6543" amino acids 88 to 347 (260 residues), 159.6 bits, see alignment E=1.7e-50 PF14496: NEL" amino acids 1255 to 1461 (207 residues), 154.2 bits, see alignment E=5.6e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QVT1 at UniProt or InterPro

Protein Sequence (1557 amino acids)

>PfGW456L13_4793 hypothetical protein (Pseudomonas fluorescens GW456-L13)
MPITPSAIQGSDPIAIAPFDKSIHFHQVRKAIPSWLLNTSPSRVDALKSVRLTLPDWHRT
ASTTAHRKLKKANQLNWTSQNTVDQALRDLLDISAFAKPLLQQKLRDRFGVEDDVEETWL
RLYAPVKTAWWVHDFSAGTTSRTISLLDAALHNFSQDEAFTQDSEFITRPDARGHFNVKQ
LKHKLSIEQFKSVCRELDIGARYQQHLQDTLKPSDKAASNVLRQKVVLSQKSALNVAAQM
ALMKHDIDQDAYDVVQGMLEDRSRLKWNGKPVDYYNLAMMDTRLSGIILIAADTASASGP
VPVIAYVPHDPQHPLKQYPSSLEFMAELTRQLRDGASVKSYQQFFSQFVPHEQRGHFFAG
LNTRLSMVKWQPVAAGSSLPSWRETPVDKPDLHFSVSSIKTDRATTFNNDLWGYRYRQTL
NKIFNDAREIAISTEYADRMARWAWWDNLEKMLSDILTIVLLVATPFVPVLGPLMLAYTA
YQLTDGVVEGLVDLAEGRLAEAGEQTLGVLESVVQLGVFAAAGAVGNVAQAKLSPFFEGL
KPVQLANGETRLWNPDLNPYQRTDVELPADARPDDQGIHQHQGRRIVRLNDQHFEVLEDP
VTGQQRIRHPQRFDAYAPTLRHNGRGAWVCETENPREWEGPSLMRRLGHSTDGFNDEQLE
QIRQISGTDEAELRRVHVESAPPPPLLTDTLQRLASPPIAPAAVPAEIAPLFSDFPELPA
TVAEQIHTRASAAERQRITQENRLPLRMRTQARELQFETQTVRAAQGLYPSASITPDTER
LVLGTLRFNTDTFGDLRLEIRQGTFDGELRYSVGPEDATRVRVLIRDDAGQYQVRDREDQ
PIHEADDFFEAVLQATQENGRNSLGYKPGDGDRFRQWVMVKSAQPSERRTVLADPPVRPV
AEHETMLLVRGGWLSREGLTLHERIQDLYPHFSEAEVDNFATALTNQGEPLRLLEEQEND
LNQLRNLIDLWRAESAGLDADNPMPLRGVRQHIAERLLACFERKNTELGSRTELHGYALD
LSRELLPIDLESEWPKRPQLKRFLDKVTILKLDNTLFSTKANGLLKDFPNLRELSANRCY
LTQLPENIGAMHRLERLRLSDNHIALDAAAVEKLKHLTYLEILRLDKNPLGRPVDISRMP
RLKVVGLRNTGITTWPEGTLSKTRPRGFLLDLRDNPISVIPEVVPGSPQAWVVARTRLDV
GNLSEANQVHYQAVRRSVALPPEPIVPYNSQAEWVVSSDYSANHWSDVPSWGMDRTNLWS
ELADEPQAQGFLNVLLDTRLSRDFQNPGPARDQLVQRVWRMLDAVYVDTPLREKLFTMAV
APVDGADAGAQLFNHMGIDVLAYEAHAYSTDPAQQEQKLVTLAKGAARLEQVNDIARADV
ASRGGNPDEVEVYLAYQTGLAERLDLPWQSKGMLFRPVSGVTDAMIDQAFDTVLALGEGD
GLVDRMLEQDFWQNHLNERYATDMEANKRRYQGLSDQLDTLRTTQREWAESTSDTQRAAL
RSRLRELMNDLPAPDTVVFADEPLSDGIFDRLLVDLGDAEKELSRRLTRQAMKRAGQ