Protein Info for PfGW456L13_4792 in Pseudomonas fluorescens GW456-L13

Annotation: Membrane carboxypeptidase (penicillin-binding protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1037 transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 167 to 184 (18 residues), see Phobius details PF00912: Transgly" amino acids 158 to 355 (198 residues), 61.5 bits, see alignment E=7e-21 PF00905: Transpeptidase" amino acids 846 to 949 (104 residues), 23.3 bits, see alignment E=3.4e-09

Best Hits

KEGG orthology group: None (inferred from 87% identity to pfo:Pfl01_4564)

Predicted SEED Role

"Membrane carboxypeptidase (penicillin-binding protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QWC4 at UniProt or InterPro

Protein Sequence (1037 amino acids)

>PfGW456L13_4792 Membrane carboxypeptidase (penicillin-binding protein) (Pseudomonas fluorescens GW456-L13)
MGALWQTDSSKTVVPNESEDEAPLPEKPRRSRHGWGAFWLLLLIIAIVVGLAAMREMRTS
KFQAQEVSKYAASLSYELKPGPSDAIRYPGEGPFDRRLGYSSLGEFLPRLIKRNFIVEAQ
TRFSPALLKYSDKGLFVPYAEKIQAGLSITDCRAAPLYQYHYPQQLYSTFASIPPVVVNS
LLFIENRFLLDPRQPLANPAVDWPRFGMAAWSQLAKMLHVPGQSAGGSTLATQLEKYRHS
PDGLTVNGAEKIRQMVSATVRAYQAGPQTLEIRQNVVRDYLNSVPLSAVPGHGEVHGMAE
GLRVWYGSDFKQANEALSSTATDPKTMAEKGLALREMLSLMIAQRRPSHYLTKGHDELAD
LTDSHIRLLAQNHVIDAEFAAAALASKVIYRDWATQPTIQPIETNKGISVARSRLAGMLN
RPLYDLDRLDLSATSTLQGQLQSEATEYLKKLADPEFATQIGLIGERLLTTTSTTQVRYS
FTLFELTPDGSRVRVQTDSTDQPFDINEGSKLELGSTAKMRVLTTYLQIIAELHDKYAGM
AVPELKKVDVPDQDRLSRWAVDYLIENKDRDLQKMLGAALDRKYSAGPGEAFFTGGGLHT
FHNFRKEDNGRIPPLRDALRESINLPFIRLMRDLVRYTTYSGPNSSAELLKDDRNPRRQE
YLAEFADREGTSFLLKFWKKYKNKDTQDRLDTFLDSMRPTPIRMAAVHRYLLPQASQESF
NAFVRSHLKGAKLTEKLTDERLVRLYEAYGPGSYDLPDQGFIAKVHPLDLWLMGYLLNHP
DAKWSDIVKASQFERQEVYSWLFKSRHKGARDSRIRTMLEIEAFLDIHQRWQKVGYPFDH
LVPSLATAIGSSGDRPAALAELIGTILNDGVRMPTLRIDSLHFAANTPFETQLINDPDVG
KRVMPSEVATAMREALSQVVDAGTAKRVAGSFKLPDGSPLAMGGKTGTGDNRIEAIGSGG
RILSSKSLNRTATFVFYIGDHHFGTLTAFVPGRSAESFTFTSALPVQVLKGMAPILTPYL
QPGTHTMCQPTEVAASR