Protein Info for PfGW456L13_4789 in Pseudomonas fluorescens GW456-L13

Annotation: OpgC protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 10 to 25 (16 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 142 to 159 (18 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 191 to 211 (21 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 275 to 292 (18 residues), see Phobius details amino acids 312 to 332 (21 residues), see Phobius details amino acids 338 to 359 (22 residues), see Phobius details PF10129: OpgC_C" amino acids 5 to 363 (359 residues), 378.2 bits, see alignment E=2e-117

Best Hits

KEGG orthology group: None (inferred from 80% identity to pfs:PFLU1105)

Predicted SEED Role

"OpgC protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293Q6A7 at UniProt or InterPro

Protein Sequence (374 amino acids)

>PfGW456L13_4789 OpgC protein (Pseudomonas fluorescens GW456-L13)
MTLARDHRIDFFRGLALIFIFWDHVPHNPLGQITLRNFGFSDAAEVFVFLAGFASVLAYG
KVLAREGFLIACVKILRRAWVLYVVHIFLLAMLMGIVFFANSHVETRDLVEEMGMHHFIS
NPQQALIDELLLRFKPNLMDPLPLYIVLLAGLPLVLPLLVRKAWVVVSMSLALYLMVPLA
GWNLAAIKDGVWYFNPVAWQLLFVLGGAAAIHSQRPRLPQTRPLVRQPLFVGAALYVVVA
GVLTVLWRWPDLHDAVVPASLQNILYPISKTDLSPVRLLHFLALAYVTAKLIPDSGWTQN
WLAQQSCRMGRFSLEIFCLGVLLAPLADMVNALTDDAFAMQIFTALVGAGLMALLAAWLE
FNKRLTGPKQVVVA