Protein Info for PfGW456L13_4743 in Pseudomonas fluorescens GW456-L13

Annotation: Outer membrane lipoprotein omp16 precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 265 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF14346: DUF4398" amino acids 28 to 106 (79 residues), 47.7 bits, see alignment E=1.8e-16 PF00691: OmpA" amino acids 146 to 241 (96 residues), 88.1 bits, see alignment E=4.3e-29

Best Hits

KEGG orthology group: None (inferred from 86% identity to pfo:Pfl01_1066)

Predicted SEED Role

"Outer membrane lipoprotein omp16 precursor" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QR64 at UniProt or InterPro

Protein Sequence (265 amino acids)

>PfGW456L13_4743 Outer membrane lipoprotein omp16 precursor (Pseudomonas fluorescens GW456-L13)
MKSSQLMIPALLAVTVTLAACSTPPNANLEQARTNYTGLQTDPQAAKVAALETKEASDYL
DKADKAYRDKEDVATVDQLAYLTNQRVEVAKQTIALRTAEASLKDASAQRAQARLDARDQ
QIKQLKDSLNARQTDRGTLVTFGDVLFATDKAELKSNGLANINKLAQYLQENPERKVIVE
GYTDSTGTASHNQSLSERRAGSVRAALVKMGVDPARIVAQGYGKEYPVADNSSTSGRAMN
RRVEVTISNDNQPVIPRSAVSSYTQ