Protein Info for PfGW456L13_4730 in Pseudomonas fluorescens GW456-L13

Annotation: RND efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1021 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 336 to 355 (20 residues), see Phobius details amino acids 362 to 382 (21 residues), see Phobius details amino acids 388 to 412 (25 residues), see Phobius details amino acids 427 to 451 (25 residues), see Phobius details amino acids 464 to 486 (23 residues), see Phobius details amino acids 531 to 550 (20 residues), see Phobius details amino acids 865 to 882 (18 residues), see Phobius details amino acids 889 to 909 (21 residues), see Phobius details amino acids 915 to 934 (20 residues), see Phobius details amino acids 963 to 983 (21 residues), see Phobius details amino acids 989 to 1013 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 1011 (1006 residues), 556.8 bits, see alignment E=8.7e-171 PF03176: MMPL" amino acids 843 to 1012 (170 residues), 29.2 bits, see alignment E=4.8e-11

Best Hits

KEGG orthology group: None (inferred from 87% identity to pen:PSEEN4240)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QW59 at UniProt or InterPro

Protein Sequence (1021 amino acids)

>PfGW456L13_4730 RND efflux transporter (Pseudomonas fluorescens GW456-L13)
MRFNVSEWALRNRQIVLFLMLLLAIVGALSYTKLGQSEDPPFTFKAMVIRTNWPGATAEE
VSRQVTERIEKKLMETGEYERIVSFSRPGESQVTFIARDSMHSVEIPELWYQVRKKINDI
RHTLPPGIQGPFFNDEFGTTFGNIYALSGEGFDYAVLKDYADRIQIQLQRVKDVGKVELL
GLQDEKIWIELSNVKLATLGLPLAVVQQALEEQNAVSTAGFFETSSERLQLRVTGNFQTV
DEIKNFPIRVGDRTFRISDVADVRRGFNDPPAPRMRFMAQDAIGLAVAMKNGGDILVLGK
ALEIEFARIQKNLPAGMELRKVSDQPAAVKTGVGEFVQVLVEALAIVLLVSFFSLGVRTG
MVVALAIPLVLAMTFACMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGFD
RVKAASYAWTSTAFPMLTGTLITAAGFLPIATAQSGTGEYTRSIFEVVTIALLASWVAAV
VFVPYLGEKLLPDLAKIHAAKHGAGQPDPYATPFYQRVRRLVEWCVRWRKTVILATVLLF
IASIVLFKFVPQQFFPASGRLELMVDLKLAEGASLSNTADEVKRLEALLKDKAGIDNYVA
YVGTGSPRFYLPLDQQLPAASFAQFVVLAKTIEEREALRTWLISTLNEQFPALRSRVTRL
ENGPPVGYPVQFRVTGEHIEEVRALARKVAAKVRENPHVVNVHLDWEEPSKVVYLNIDQD
RARALGVSTANLSRFLQSSLTGSSVSQYREDNELIEILLRGTVHERTELSLLPSLAVPTD
NGRSVALSQIATLEYGFEEGIIWHRNRLPNVTVRADIYGKEQPATLVQQIMPTLDPIRAE
LPDGYLLDVGGTVEDSARGQNSVKAGVPLFIVVVLTLLMLQLRSFSRTAMVFLTAPLGLI
GVTLFLLVFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIAAGLKPWQAIIEATVRR
FRPIVLTALAAVLAMIPLSRSVFFGPMAVAIMGGLIVATALTLLFLPALYAAWFRVRKES
V