Protein Info for PfGW456L13_465 in Pseudomonas fluorescens GW456-L13

Annotation: YD repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1529 transmembrane" amino acids 1307 to 1331 (25 residues), see Phobius details amino acids 1342 to 1362 (21 residues), see Phobius details amino acids 1374 to 1394 (21 residues), see Phobius details PF05593: RHS_repeat" amino acids 732 to 768 (37 residues), 29.6 bits, see alignment (E = 3.6e-11) TIGR01643: YD repeat (two copies)" amino acids 732 to 767 (36 residues), 25.7 bits, see alignment (E = 1.2e-09) TIGR03696: RHS repeat-associated core domain" amino acids 1225 to 1302 (78 residues), 71.2 bits, see alignment 8.3e-24

Best Hits

Predicted SEED Role

"YD repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QJ25 at UniProt or InterPro

Protein Sequence (1529 amino acids)

>PfGW456L13_465 YD repeat protein (Pseudomonas fluorescens GW456-L13)
VANNINGPLIPFSISFDSFRTTDFGWGRGWSLGLSSYNRKTRKLTLASGVSYRVYISRGQ
LIVRDKKLQDTRVTLDGDNLVVSHKNGLIERLVRPDETYDEWLPEHVFSNEGRSINLKYM
LVRGRRVLHEIHDQQQRVVALNHETKDQPASITVWPDHPPRRLKFVLRVRDGWLRQITLD
HGSAEHLAWSFNYQLLDGFLVMTDVRAPGGSVERIEYAPQKHRLPLGAPINALPAVRRSV
LVPGTGLPTITRVYEYSDKNFLGYQSGLRWVQDGDHLHGHKGPYTYSCTERLVAGEGVNA
VELSRIERTYNRFHLMISEKSISNGKVQQKTVVYHDVDGLDFSGQPAHFQLQKTAIVSYV
DISASATRRTETTHTTYDEFGNLLTQINPSGAREDYVYYPAEGAEGCPPNSLGFITALKE
RSVTPSPDFAPAPTVIVRFSYIDLPSLREGGHRFLLPQSERLFEGGNNKPCVDTRFEYID
DASDAFYGRLKSRSQTGHNGHRRLEFKYSIDGDWVKTLQRLFVGSERHDRNVWHDRFIGQ
EVKLRDGGGNELLKKYDNLNRVVRETAAFDGTDIASRITEFYGESQSEDGATIGITNIRG
VLSKIWLDGVGRTTKVKVQDFDSADRPLRLTYEAHYDNFGRLVSEVSQDWSEGKATESTT
TYSHDGWGRVCRTVGPDGVPVNDVFDPVSLTRTCWLDGAGKTRSVLNVFGKPDREERIDS
EGAVTITATFTYDGLGRCLTQTNEAGFETSFRYDLYGRLIETILPDGTSIKKKYDPLSTG
DHPIEISADDYVLGTRTYDGLLRVTRTTVGGRTETRTYEGGGAQALQQVTAAGDVFRFAL
DPMLNGAVTARMGGHAESARHRFDPLTGQLVETSSPAIQRRFEYSRSGKEKSREWISSEG
RFGTATTRSLNGLPISFIDVNDVETTYIHDAAARPVEIRQGPVLAKYAYGAQGQLLTLSV
EDTASKRSLTTTLVHDEFGREIQRISQFGDGSRLEVIQAFGADDKLQQRSLVSGAQSRTE
TFAYDSRGRLTRYDCEGTQAPIDAWGKRIDFQAFTYDYLDNLLTVRTGFDGEENLCRFSY
DRPDKTQLSSMTHSHAHYQPGQVSFEYDANGNLLNDNQGRTFRYDTLSRLESVASAGGRT
HYQFDGEDQLHAVAAESAELIRLFHSEHALCSEVAGNHRRSLLSGDGKYLAEQQGDDVVL
FVTDGQGTALARLGSQDESVLSCLPYGDRPASSGLGALLGFQGERLDPSTGCYLLGRGYR
AYNPRLMRFHSPDSWSPFEGGGLNAYAYCLGDPVNLKDPTGHIPTLGWVKIGVTAALAAA
AIALTVVTMGATAPLVPISANALAFLTLEVISATVSIASAVVDELAPDSLGAQILTYSSL
ALGVVSLGATAVAKIGSKGIGFALTKSVGSLADVVAAQRGAARVAVGRRLHGAVSTANEA
LRSTVKLQSRLNNVLTAKTVTSGVGIAAKSAFVVANSEKYAAKADALLQDYWPSLTEGFS
AQKFRSDALDALESFTHEIGEQIIKLRGV