Protein Info for PfGW456L13_4533 in Pseudomonas fluorescens GW456-L13

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 29 to 34 (6 residues), see Phobius details amino acids 295 to 314 (20 residues), see Phobius details PF02743: dCache_1" amino acids 45 to 280 (236 residues), 57.7 bits, see alignment E=1.3e-19 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 325 to 488 (164 residues), 175.8 bits, see alignment E=3e-56 PF00990: GGDEF" amino acids 328 to 484 (157 residues), 172.6 bits, see alignment E=5.6e-55

Best Hits

KEGG orthology group: None (inferred from 89% identity to pfo:Pfl01_1336)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QV24 at UniProt or InterPro

Protein Sequence (497 amino acids)

>PfGW456L13_4533 hypothetical protein (Pseudomonas fluorescens GW456-L13)
MPLRSPLYSQRSLVLTLVALLGAGFLATSFLSYYASRASIRDNIVNTELPLTSDTVYSEI
QKDLVRPILISSMMARDTFMRDWVVNGEKDSDQMTRYLNEVMTHYGAYTAFFVSNTSLTY
YHAKGVLKQVKATEPRDAWYFRVRDMKDPYEINVDPDLANKDNLTFFINYKVYDYNSRFI
GAAGVGLTVDAVIKLIDKYQQRYQRSVYFVDNFGRLVLTGAEGGPQGAHIGQKLSELDSM
KDLVSRLPKPHSGSYEYSVQGQGHFLNVRFIPELNWYLFVDKREDSALGEIRQSLYLNLL
ICLLVTLIVLALLSRVIKRYQDKIQAQAILDSLTELPNRRGFDLLAAQAMHEARREPKPL
TALLLDLDHFKALNDTYGHLAGDQVLIGFARDLESCLRHSDIVCRWGGEEFIVLLKDTDG
KTGLMIAEKIRQHVEQQRYAYNSQALHVTVSIGITTQQPDDTLHSLLSRADHAMYRAKQT
GRNRTCVEKPHFSYEPA