Protein Info for PfGW456L13_4525 in Pseudomonas fluorescens GW456-L13

Annotation: Tricarboxylate porin OpdH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF03573: OprD" amino acids 38 to 427 (390 residues), 530.3 bits, see alignment E=1.6e-163

Best Hits

KEGG orthology group: None (inferred from 87% identity to pfl:PFL_1440)

Predicted SEED Role

"Tricarboxylate porin OpdH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QTF0 at UniProt or InterPro

Protein Sequence (429 amino acids)

>PfGW456L13_4525 Tricarboxylate porin OpdH (Pseudomonas fluorescens GW456-L13)
MQSLQTQAIAPARLSRFSHTALASAAALAGFSPLSQAAFFEDSSATFETRNMYFNRDFRD
GTSAQQSKRDEWAQGFMLNLKSGYTDGTVGFGVDALGMMGVKLDSSPDRTGTGLLPTDDG
RAVDEYSKLGLTGKMKISASELKIGTLIPELPILKPNDGRILPQTFEGGMLTSKELKNLT
FTGGRLDKAKDRDSTDFEDIALNNKNGRFAGTVAGKHFDFGGLDYKLTDKITGSYHFAQL
DEVYNQHFLGLIASQPFGPGTFATDLRFAISDDQGEARGGKIDNKSLNGLVSYALSGHKF
SAGYQHMSGDSAFPYVDGADPYLVNFVQINDFAGAEERSWQARYDFDFVTLGVPGLTFMS
RYVSGDNIKLKNGDEGKEWERNSEIKYVVQSGALKDVAVRLRNATYRSNYSARDADEVRL
LVSYSVALW