Protein Info for PfGW456L13_449 in Pseudomonas fluorescens GW456-L13

Annotation: Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 TIGR04022: sulfur acquisition oxidoreductase, SfnB family" amino acids 22 to 410 (389 residues), 585.6 bits, see alignment E=2.3e-180 PF02771: Acyl-CoA_dh_N" amino acids 39 to 134 (96 residues), 44.9 bits, see alignment E=2.2e-15 PF08028: Acyl-CoA_dh_2" amino acids 251 to 385 (135 residues), 74.9 bits, see alignment E=1.2e-24 PF00441: Acyl-CoA_dh_1" amino acids 253 to 382 (130 residues), 34.5 bits, see alignment E=3.3e-12

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_0240)

Predicted SEED Role

"Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293PWP1 at UniProt or InterPro

Protein Sequence (410 amino acids)

>PfGW456L13_449 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme (Pseudomonas fluorescens GW456-L13)
MSSLADAIVQSDLDIAPLLLPAQILRNDAQAIKAAHELAQVARQQAAKRDQQRKLPWSEI
EQFTRSGLGSISIPREYGGPQVSFVTLAEVFAIISAADPALGQIPQNQFGILNLVLGSAT
EAQKQQLFKSVLEGWRIGNAGPERGTKNTLELKARITADGVLNGQKFYSTGALFAHWVAV
KALNDDGKQVLAFIRRGTPGLRIVDDWSGFGQRTTASGTILLNNVQADPELVVDNWRIND
TPNIQGAVSQLIQAAIDAGIARGAIDDAIDFVKTRARPWIDAKVERASDDLYVIADIGRL
KIELHAAEALLRKAGQVLDDVSAAPLTAESAARASIAVAEAKVLTTEISLLASEKLLELA
GSRATLAEFNLDRHWRNARVHTLHDPVRWKYHAVGAYRLNGTLPNRHSWI