Protein Info for PfGW456L13_4380 in Pseudomonas fluorescens GW456-L13

Annotation: O-antigen biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1197 PF13641: Glyco_tranf_2_3" amino acids 7 to 129 (123 residues), 31.5 bits, see alignment E=3.4e-11 amino acids 580 to 795 (216 residues), 41.3 bits, see alignment E=3.4e-14 PF00535: Glycos_transf_2" amino acids 8 to 177 (170 residues), 67.9 bits, see alignment E=2.2e-22 amino acids 581 to 758 (178 residues), 54.1 bits, see alignment E=3.7e-18 PF13524: Glyco_trans_1_2" amino acids 1108 to 1180 (73 residues), 29.1 bits, see alignment 1.9e-10

Best Hits

KEGG orthology group: None (inferred from 84% identity to pfo:Pfl01_1508)

Predicted SEED Role

"O-antigen biosynthesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QUM5 at UniProt or InterPro

Protein Sequence (1197 amino acids)

>PfGW456L13_4380 O-antigen biosynthesis protein (Pseudomonas fluorescens GW456-L13)
VNSLPLVSLVIPAFNPRFFGRALHTAVSQSYGNLEIIVCDDSRGQEIEDIVASLVEEGAS
VRYVRNPRTLGLVGNLQACLEQARGEYIKFLCDDDQLFSACIERQAQMLIDCADVNLVVA
QRLLWDADDMPLPSRLENTPLSPVGGVFKGEDLLAIFENFPVNILGGFSNAMFRRADVLE
LFPALTQPGHCFVATLDFALYVCLMRRGNLAVSNHVLGVERLYPERLSGQQSMRDAAEIE
RQWLSQMLKARSGESAPAQGWVRYLPLTRVDESPRVWEELPLSRTLGTKQTTQDWHVGIA
SVSFAQLYAQWLACRRLTDGQRELLADTLEAWPTKPKIVPIIIDEHGSRSALELTLQSLA
DQDYAPELTLVLSASCTEAVLDERVFRLPLQDDWQQQINALLPQLEGTGWFYLLRAGDRL
VAPALLVMAERIALSRAITCLYSDEGGLHQGESAEPAFKPDFNLDLMRSYPYVGRALAFE
REQFLALGGFDSVYGELAPHDVLWRMVESGGTQVVGHVSEVLLESAFDLTKWLSLPQVVD
TNPRLLEAHLQRLGVAHGIRQGSSALLNRVDYHHEDRPLVSIVIVSKDQTLALQRCVESL
LEKTAYGEYELLLVDNGSESAEALDWFAGMAQLGSDRVRVLRYELQGNAAAVRNFAVQQA
AGEYVLMLNPYTVITQAQWLGELLNHAQRPEVGVVGAKLFNPDGRVLHAGLILGLQGPAG
VPFHGEMLHAAGYMYRLQVAHNFSAVGGDCLMVRKAVFDAVGGLDEQGLAHSLNEVDLCL
RVGQEGYLVVWTPHAQLALGAQPAVVAQEGDQARSEQEQEVFYKRWLPIVARDPAYNTNL
ALQGLGGASFSLEPGLRSGWSPFSKAQLPKILALPVNASAIGHYRVTQPLIELEAAGRAH
GRIHYNLPTIIEVERHSPDVIILQGRYSEGPINEIPSLQKYSSARRIYELDDFVINVPHR
NAHIRNMPGKDEMESLVRRAIGMCDRVVVSTEPLGNALSDMHHDIRVVPNMLASHLWTDL
RSQRRTSKKPRVGWGGGTSHHGDLAVIADVVRELANEVDWVFFGMCPDDLRQYMHEFHGV
IGLDVYPAKLASLNLDLALAPLEFHIFNDCKSNLRLLEYGACGYPVICTDTEAYRGYLPC
TRIKTNSTDEWLQAIRMHLADPDASYRMGDELREIVLRDYVLRGDNLRYWENGWLAD