Protein Info for PfGW456L13_4375 in Pseudomonas fluorescens GW456-L13

Annotation: perosamine synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 PF01041: DegT_DnrJ_EryC1" amino acids 12 to 363 (352 residues), 406.4 bits, see alignment E=1.2e-125 PF00155: Aminotran_1_2" amino acids 33 to 126 (94 residues), 20.1 bits, see alignment E=3.4e-08

Best Hits

KEGG orthology group: None (inferred from 84% identity to pfo:Pfl01_1514)

Predicted SEED Role

"perosamine synthetase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QUU7 at UniProt or InterPro

Protein Sequence (373 amino acids)

>PfGW456L13_4375 perosamine synthetase (Pseudomonas fluorescens GW456-L13)
MSRIHYTKPSVGELEADYVLDAVRHGWGERCYEYLTRFEKSFAEHVGATYAIATSSCTGA
LHMGMAALGIGAGDEVILADTNWIASAAPITYLGATPVFVDVLADSWCLDPQQVRRAITP
RTKAILAVHLYGNLCDMDALLAIGREFGLPVIEDAAEAIGSQWRGQAAGSLGAFGAFSFH
GTKTMTTGEGGIFVTSDKALYDRVLTLSNHGRVAGSSKQFWPDFLGFKYKMSNLQAAVGC
AQVERIDELIERKRAIFANYAQALALLPGLSMNPEPEHARNGYWMPTVVFDRELGITRDM
LIAAFQAADIDARVFFWPLSSLPMFSELTADSPVAHALPERAINLPSYHDMTDDDQQRVI
EVLRALVLKRTRL